| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H11g12913 | 11:13,132,191-13,135,065 | - | C2H11g16214 | CX11g012957 | LOC_Os11g25700 | Os11g0443700 | - | Detail |
| C1H11g04749 | 11:13,167,508-13,168,530 | + | C2H11g07005 | CX11g011904 | LOC_Os11g25780 | Os11g0444700 | - | Detail |
| C1H11g19485 | 11:13,187,596-13,188,369 | + | C2H11g06487 | CX11g013403 | LOC_Os11g25780 | Os11g0444700 | - | Detail |
| C1H11g28391 | 11:13,196,228-13,199,091 | - | C2H11g02987 | - | - | - | - | Detail |
| C1H11g31601 | 11:13,207,168-13,207,573 | + | C2H11g27394 | - | - | - | - | Detail |
| C1H11g10558 | 11:13,244,867-13,248,930 | + | C2H11g29847 | CX11g011625 | LOC_Os11g25920 | Os11g0446000 | RSS3 | Detail |
| C1H11g07790 | 11:13,268,689-13,288,589 | + | C2H11g23151 | CX11g013991 | LOC_Os11g25980 | Os11g0446500 | - | Detail |
| C1H11g09251 | 11:13,342,013-13,346,021 | - | C2H11g07636 | CX11g013291 | - | - | - | Detail |
| C1H11g30298 | 11:13,347,066-13,347,524 | + | C2H11g29907 | - | - | - | - | Detail |
| C1H11g14144 | 11:13,352,186-13,359,233 | + | C2H11g20908 | CX11g012501 | LOC_Os11g26030 | Os11g0447300 | - | Detail |
| C1H11g04234 | 11:13,390,910-13,398,562 | + | C2H11g17659 | CX11g012981 | LOC_Os11g26130 | Os11g0448000 | OsWSS1 | Detail |
| C1H11g13717 | 11:13,401,164-13,403,931 | + | C2H11g03937 | CX11g012888 | LOC_Os11g26140 | Os11g0448200 | ARK1 | Detail |
| C1H11g04240 | 11:13,404,898-13,409,728 | + | C2H11g29204 | CX11g013778 | LOC_Os11g26160 | Os11g0448400 | - | Detail |
| C1H11g26780 | 11:13,504,421-13,505,054 | - | C2H11g08345 | CX11g014676 | LOC_Os11g26390 | Os11g0450400 | - | Detail |
| C1H11g29112 | 11:13,512,137-13,513,124 | + | C2H11g06228 | CX11g013361 | - | - | - | Detail |
| C1H11g11929 | 11:13,586,862-13,587,945 | - | C2H11g13143 | CX11g011978 | LOC_Os11g26570 | Os11g0451700 | - | Detail |
| C1H11g00705 | 11:13,602,761-13,604,055 | - | C2H11g19619 | - | - | - | - | Detail |
| C1H11g18633 | 11:13,605,477-13,605,977 | - | C2H11g06074 | - | - | - | - | Detail |
| C1H11g03837 | 11:13,632,711-13,633,102 | - | C2H11g04557 | - | LOC_Os11g26710 | Os11g0453550 | - | Detail |
| C1H11g13755 | 11:13,656,258-13,658,923 | - | C2H11g11432 | - | LOC_Os11g26730 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01677 | 3:1,883,766-1,887,423 | - | C1H3g00456 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C2H3g16470 | 3:1,893,023-1,894,552 | + | C1H3g23782 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C2H3g12777 | 3:1,933,825-1,935,351 | + | C1H3g00353 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C2H3g27330 | 3:1,940,534-1,942,090 | + | C1H3g25985 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C2H3g29153 | 3:1,951,839-1,953,458 | + | C1H3g15064 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C2H3g12329 | 3:1,955,457-1,958,399 | - | C1H3g07260 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C2H3g13203 | 3:1,964,827-1,965,304 | - | C1H3g31769 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C2H3g17473 | 3:1,987,231-1,988,894 | + | C1H3g10738 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C2H3g05466 | 3:1,992,006-1,992,782 | + | - | - | - | - | - | Detail |
| C2H3g05277 | 3:1,993,925-1,996,800 | + | C1H3g01474 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C2H3g19470 | 3:1,997,560-1,999,274 | + | C1H3g10114 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C2H3g09892 | 3:2,001,052-2,004,476 | + | C1H3g00645 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g00749 | 3:2,005,294-2,005,643 | - | C1H3g11403 | CX3g028262 | LOC_Os03g04780 | Os03g0286500 | - | Detail |
| C2H3g24267 | 3:2,008,300-2,011,820 | + | C1H3g11848 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C2H3g24637 | 3:2,014,747-2,017,084 | + | C1H3g03155 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C2H3g16825 | 3:2,025,016-2,028,837 | + | C1H3g16077 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C2H3g26010 | 3:2,035,008-2,038,711 | + | C1H3g31558 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C2H3g05143 | 3:2,039,567-2,040,522 | - | C1H3g10254 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C2H3g20094 | 3:2,061,134-2,067,861 | + | C1H3g19270 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C2H3g26910 | 3:2,068,501-2,074,019 | - | C1H3g30404 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |