| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g03677 | 1:5,228,990-5,233,936 | - | C2H1g07094 | CX1g001003 | LOC_Os01g11120 | Os01g0209400 | - | Detail |
| C1H1g12202 | 1:5,240,740-5,247,086 | - | C2H1g19634 | CX1g000194 | LOC_Os01g11130 | Os01g0209500 | - | Detail |
| C1H1g22199 | 1:5,260,169-5,263,608 | - | C2H1g00003 | CX1g004422 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| C1H1g04985 | 1:5,275,210-5,277,507 | - | C2H1g04035 | CX1g004758 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| C1H1g27615 | 1:5,290,703-5,291,914 | + | C2H1g10978 | CX1g001982 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| C1H1g05366 | 1:5,292,191-5,294,314 | - | C2H1g29549 | CX1g004173 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| C1H1g26696 | 1:5,295,196-5,296,298 | - | - | - | LOC_Os01g11230 | - | - | Detail |
| C1H1g15458 | 1:5,308,574-5,312,697 | + | C2H1g02275 | - | - | Os01g0210750 | - | Detail |
| C1H1g12886 | 1:5,309,605-5,313,470 | - | C2H1g05349 | CX1g002610 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| C1H1g30027 | 1:5,316,751-5,321,347 | + | C2H1g07302 | CX1g004526 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| C1H1g07906 | 1:5,367,183-5,368,508 | - | C2H1g05400 | - | LOC_Os01g11350 | Os01g0211800 | - | Detail |
| C1H1g25024 | 1:5,381,875-5,394,457 | + | C2H1g30364 | CX1g006413 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| C1H1g24516 | 1:5,402,401-5,407,612 | + | C2H1g07400 | CX1g004990 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| C1H1g10197 | 1:5,408,201-5,409,925 | - | C2H1g07852 | CX1g007192 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| C1H1g30544 | 1:5,417,884-5,418,288 | - | - | - | - | - | - | Detail |
| C1H1g26340 | 1:5,433,082-5,438,674 | - | C2H1g19922 | CX1g001182 | LOC_Os01g11460 | Os01g0212700 | - | Detail |
| C1H1g22295 | 1:5,441,280-5,441,984 | - | C2H1g00533 | CX1g001182 | LOC_Os01g11490 | Os01g0213100 | - | Detail |
| C1H1g24050 | 1:5,445,123-5,445,803 | - | C2H1g20430 | CX1g001182 | LOC_Os01g11500 | Os01g0213100 | - | Detail |
| C1H1g28036 | 1:5,473,048-5,474,935 | - | C2H1g27187 | CX1g004394 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |
| C1H1g17492 | 1:5,497,154-5,499,229 | - | C2H1g17634 | CX1g003866 | LOC_Os01g11570 | Os01g0214200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g30398 | 12:464,431-466,073 | - | C1H11g05819 | CX12g017999 | LOC_Os12g01900 | Os11g0109700 | - | Detail |
| C2H12g14314 | 12:466,277-467,170 | - | C1H11g05819 | CX12g017999 | LOC_Os12g01900 | Os12g0109700 | - | Detail |
| C2H12g14425 | 12:469,972-473,953 | + | C1H12g11854 | CX12g015337 | LOC_Os12g01910 | Os12g0109800 | - | Detail |
| C2H12g26139 | 12:475,194-476,642 | - | C1H11g26109 | CX12g015162 | LOC_Os12g01916 | Os12g0109900 | - | Detail |
| C2H12g04773 | 12:476,759-479,129 | - | C1H11g26109 | CX12g015162 | LOC_Os12g01916 | Os12g0109900 | - | Detail |
| C2H12g10658 | 12:480,105-489,851 | - | C1H12g24224 | CX12g015162 | LOC_Os12g01922 | Os12g0110000 | - | Detail |
| C2H12g12112 | 12:494,610-497,730 | - | C1H12g13590 | CX12g017518 | LOC_Os12g01930 | Os12g0110100 | - | Detail |
| C2H12g17021 | 12:498,276-501,483 | - | C1H12g23491 | CX12g015078 | LOC_Os12g01940 | Os12g0110300 | - | Detail |
| C2H12g05654 | 12:501,669-504,116 | + | C1H12g03381 | CX12g016362 | LOC_Os12g01950 | Os12g0110400 | - | Detail |
| C2H12g21050 | 12:520,766-523,470 | + | C1H12g03151 | CX12g015887 | LOC_Os12g02020 | Os12g0111400 | - | Detail |
| C2H12g18672 | 12:523,798-525,367 | - | C1H11g25556 | CX12g016454 | LOC_Os12g02030 | Os12g0111500 | - | Detail |
| C2H12g15668 | 12:530,556-530,966 | - | C1H12g08905 | CX12g018566 | LOC_Os12g02040 | Os12g0111600 | - | Detail |
| C2H12g30261 | 12:533,089-534,966 | + | C1H12g25705 | CX12g016102 | LOC_Os11g02090 | Os12g0111700 | - | Detail |
| C2H12g20566 | 12:537,330-538,857 | + | C1H11g29054 | CX12g016369 | LOC_Os12g02060 | Os12g0111800 | - | Detail |
| C2H12g14717 | 12:539,787-540,555 | - | C1H12g03557 | CX12g016960 | LOC_Os12g02070 | Os12g0416500 | - | Detail |
| C2H12g11323 | 12:547,295-549,507 | + | C1H12g09789 | CX12g017779 | LOC_Os12g02080 | Os12g0112000 | - | Detail |
| C2H12g07351 | 12:550,393-552,985 | + | C1H12g21197 | CX12g016421 | LOC_Os12g02094 | Os12g0112200 | - | Detail |
| C2H12g02181 | 12:554,403-559,835 | + | C1H12g08143 | CX12g016020 | LOC_Os12g02100 | Os12g0112300 | - | Detail |
| C2H12g27918 | 12:560,294-564,540 | + | C1H12g16160 | CX12g017415 | LOC_Os12g02105 | Os12g0112401 | - | Detail |
| C2H12g12409 | 12:562,202-565,120 | - | C1H12g21687 | CX12g018065 | LOC_Os12g02120 | Os12g0112500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |