| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02571 | 1:266,603-267,964 | - | C2H1g18473 | CX1g000537 | LOC_Os01g01660 | Os01g0106400 | OsIRL | Detail |
| C1H1g31539 | 1:273,558-274,431 | + | - | - | - | - | - | Detail |
| C1H1g08578 | 1:276,733-317,533 | + | C2H1g04520 | CX1g002200 | LOC_Os01g01689 | Os01g0106700 | OsATM | Detail |
| C1H1g26239 | 1:318,110-320,304 | + | C2H1g12430 | CX1g002566 | LOC_Os01g01700 | Os01g0106800 | - | Detail |
| C1H1g28803 | 1:322,724-324,583 | + | C2H1g00316 | - | LOC_Os01g01700 | Os01g0106800 | - | Detail |
| C1H1g20881 | 1:325,169-331,118 | - | C2H1g28973 | CX1g001967 | LOC_Os01g01710 | Os01g0106900 | - | Detail |
| C1H1g09103 | 1:333,869-336,954 | - | C2H1g10506 | CX1g004612 | LOC_Os01g01720 | Os01g0107000 | - | Detail |
| C1H1g00684 | 1:340,559-345,048 | - | C2H1g12735 | CX1g000779 | LOC_Os01g01740 | Os01g0747400 | - | Detail |
| C1H1g04409 | 1:358,928-362,219 | + | C2H1g04613 | CX1g003507 | LOC_Os01g01780 | Os01g0107700 | - | Detail |
| C1H1g12454 | 1:362,633-366,812 | - | C2H1g02243 | CX1g000457 | LOC_Os01g01790 | Os01g0107900 | - | Detail |
| C1H1g21020 | 1:368,870-378,122 | + | C2H1g12942 | CX1g004339 | LOC_Os01g01800 | Os01g0108000 | - | Detail |
| C1H1g12709 | 1:381,696-393,285 | + | C2H1g09033 | CX1g004858 | LOC_Os01g01830 | Os01g0108200 | - | Detail |
| C1H1g08683 | 1:399,536-401,623 | + | C2H1g30343 | CX1g006268 | LOC_Os01g01840 | Os01g0108400 | - | Detail |
| C1H1g11414 | 1:408,973-411,122 | + | C2H1g23960 | CX1g002791 | LOC_Os01g01870 | Os01g0108600 | - | Detail |
| C1H1g06105 | 1:415,048-417,018 | + | C2H1g02003 | CX1g005800 | LOC_Os01g01890 | Os01g0108800 | - | Detail |
| C1H1g07324 | 1:421,056-427,923 | + | C2H1g26140 | CX1g006717 | LOC_Os01g01920 | Os01g0109300 | WFSL1, ST3, OsSAMHD1 | Detail |
| C1H1g25672 | 1:429,993-430,709 | + | C2H1g04643 | CX1g002043 | LOC_Os01g01940 | Os01g0109500 | - | Detail |
| C1H1g19369 | 1:433,026-442,555 | - | C2H1g05030 | CX1g002189 | LOC_Os01g01960 | Os01g0109700 | - | Detail |
| C1H1g20420 | 1:444,437-446,287 | - | C2H1g22311 | CX1g007051 | LOC_Os01g01970 | Os01g0109750 | - | Detail |
| C1H1g31250 | 1:461,794-467,397 | + | C2H1g21187 | CX1g002134 | LOC_Os01g02000 | Os01g0110100 | PHO1;1, OsPHO1;1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g28847 | 9:14,495,660-14,501,828 | + | C1H9g14790 | CX9g056670 | LOC_Os09g28480 | Os09g0458400 | - | Detail |
| C2H9g06834 | 9:14,527,167-14,527,978 | + | C1H9g30078 | - | LOC_Os09g28520 | Os09g0459200 | SG1, OsSG1 | Detail |
| C2H9g17751 | 9:14,547,384-14,551,872 | - | C1H9g01784 | CX9g056105 | LOC_Os09g28560 | Os09g0459600 | - | Detail |
| C2H9g06752 | 9:14,555,807-14,567,696 | + | C1H9g28087 | CX9g057640 | LOC_Os09g28570 | Os09g0459800 | - | Detail |
| C2H9g25937 | 9:14,568,988-14,570,284 | - | C1H9g15128 | CX9g055374 | - | Os09g0459900 | - | Detail |
| C2H9g01353 | 9:14,575,563-14,576,426 | + | C1H9g20930 | CX9g056394 | LOC_Os09g28600 | Os09g0460100 | - | Detail |
| C2H9g17816 | 9:14,579,147-14,588,717 | + | C1H9g17836 | CX9g055971 | LOC_Os09g28610 | Os09g0460200 | - | Detail |
| C2H9g21518 | 9:14,592,660-14,593,598 | + | C1H9g11334 | CX9g055140 | LOC_Os09g28640 | Os09g0460500 | - | Detail |
| C2H9g29988 | 9:14,596,327-14,597,068 | - | - | - | - | - | - | Detail |
| C2H9g26252 | 9:14,598,004-14,598,942 | + | C1H9g08722 | CX9g055140 | LOC_Os09g28650 | Os09g0460700 | - | Detail |
| C2H9g05249 | 9:14,628,687-14,629,661 | - | C1H9g31584 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C2H9g03017 | 9:14,629,957-14,630,593 | - | C1H9g31193 | - | - | Os09g0462301 | - | Detail |
| C2H9g27701 | 9:14,634,127-14,636,646 | + | C1H9g18452 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C2H9g19629 | 9:14,637,145-14,639,254 | + | C1H9g29610 | CX9g056435 | LOC_Os09g28780 | - | - | Detail |
| C2H9g05705 | 9:14,650,276-14,654,133 | + | C1H9g28013 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C2H9g21321 | 9:14,655,361-14,655,770 | + | C1H9g15723 | - | - | Os09g0462850 | - | Detail |
| C2H9g19364 | 9:14,657,776-14,660,369 | - | C1H9g15089 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C2H9g06754 | 9:14,662,217-14,665,042 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C2H9g23768 | 9:14,665,134-14,667,009 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | - | - | Detail |
| C2H9g26932 | 9:14,677,261-14,679,579 | - | C1H9g16758 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |