| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g30064 | 1:4,844,359-4,848,296 | - | C2H1g25446 | CX1g000033 | LOC_Os01g10450 | Os01g0201200 | - | Detail |
| C1H1g16523 | 1:4,877,117-4,878,002 | - | C2H1g03634 | CX1g002271 | LOC_Os01g10480 | Os01g0201500 | - | Detail |
| C1H1g23585 | 1:4,883,309-4,883,626 | - | C2H1g24699 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C1H1g14400 | 1:4,883,733-4,884,400 | - | C2H1g28525 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C1H1g15606 | 1:4,893,738-4,902,428 | - | C2H1g12459 | CX1g006928 | LOC_Os01g10504 | Os01g0201700 | RAG, MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1 | Detail |
| C1H1g13227 | 1:4,913,013-4,914,395 | - | C2H1g19665 | CX1g003430 | LOC_Os01g10520 | Os01g0201800 | - | Detail |
| C1H1g22249 | 1:4,924,675-4,932,481 | - | C2H1g09694 | CX1g006334 | LOC_Os01g10530 | Os01g0201900 | - | Detail |
| C1H1g17903 | 1:4,967,422-4,968,687 | + | C2H1g26674 | CX1g001589 | LOC_Os01g10580 | Os01g0202500 | - | Detail |
| C1H1g18982 | 1:4,974,967-4,975,794 | + | C2H1g25575 | - | - | Os01g0202601 | - | Detail |
| C1H1g22813 | 1:4,981,388-4,984,579 | + | C2H1g11027 | CX1g006160 | LOC_Os01g10590 | Os01g0202700 | - | Detail |
| C1H1g30411 | 1:4,991,095-4,994,109 | - | C2H1g23331 | CX1g001315 | LOC_Os01g10600 | Os01g0202800 | OsNIP1;2 | Detail |
| C1H1g09441 | 1:4,995,564-4,997,839 | - | C2H1g21358 | CX1g005369 | LOC_Os01g10610 | Os01g0203000 | - | Detail |
| C1H1g13068 | 1:5,003,013-5,004,957 | - | C2H1g27421 | CX1g004390 | LOC_Os01g10630 | Os01g0203300 | - | Detail |
| C1H1g30796 | 1:5,043,175-5,047,575 | - | C2H1g16705 | CX1g005785 | LOC_Os01g10690 | Os01g0204000 | - | Detail |
| C1H1g01843 | 1:5,051,683-5,063,908 | - | C2H1g09104 | - | - | - | - | Detail |
| C1H1g24281 | 1:5,065,518-5,068,602 | + | C2H1g06825 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| C1H1g05818 | 1:5,070,855-5,074,344 | + | C2H1g00620 | - | - | - | - | Detail |
| C1H1g15430 | 1:5,079,327-5,082,999 | + | C2H1g06825 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| C1H1g01247 | 1:5,083,533-5,086,781 | - | C2H1g29778 | CX1g002344 | LOC_Os01g10800 | Os01g0205200 | - | Detail |
| C1H1g30346 | 1:5,087,144-5,088,059 | + | C2H1g24453 | CX1g004381 | LOC_Os01g10810 | Os01g0205300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02697 | 3:29,146,935-29,148,232 | - | C1H3g22291 | CX3g030393 | LOC_Os03g44130 | Os03g0643100 | - | Detail |
| C2H3g30157 | 3:29,182,515-29,186,429 | + | C1H3g16948 | CX3g030242 | LOC_Os03g56050 | Os03g0770700 | - | Detail |
| C2H3g09554 | 3:29,189,450-29,193,329 | - | C1H3g26645 | CX3g030133 | LOC_Os03g56060 | Os03g0770800 | OsCSLC9 | Detail |
| C2H3g10825 | 3:29,202,059-29,204,348 | - | C1H3g03394 | CX3g029202 | LOC_Os03g56070 | Os03g0770900 | - | Detail |
| C2H3g08836 | 3:29,213,839-29,215,097 | - | C1H3g11674 | CX3g029828 | LOC_Os03g56090 | Os03g0771100 | OsMYB36c | Detail |
| C2H3g08036 | 3:29,224,208-29,229,435 | + | C1H3g05785 | CX3g025561 | LOC_Os03g56110 | Os03g0771500 | - | Detail |
| C2H3g12840 | 3:29,236,808-29,237,572 | + | C1H3g29067 | CX3g028014 | LOC_Os03g56160 | Os03g0772600 | - | Detail |
| C2H3g23317 | 3:29,240,167-29,240,833 | + | C1H3g22167 | CX3g028800 | LOC_Os03g56130 | Os03g0669300 | - | Detail |
| C2H3g12690 | 3:29,246,689-29,249,090 | + | C1H3g26236 | CX3g025388 | LOC_Os03g56110 | Os03g0771500 | - | Detail |
| C2H3g04290 | 3:29,249,962-29,252,512 | + | C1H3g26236 | CX3g025388 | LOC_Os03g56140 | Os03g0772100 | - | Detail |
| C2H3g11146 | 3:29,257,830-29,259,857 | + | C1H3g28844 | CX3g028014 | LOC_Os03g56160 | Os03g0772600 | - | Detail |
| C2H3g15287 | 3:29,266,625-29,269,673 | + | C1H3g06172 | CX3g028141 | LOC_Os03g56190 | Os03g0772800 | - | Detail |
| C2H3g23997 | 3:29,284,727-29,290,664 | - | C1H3g27520 | CX3g029781 | LOC_Os03g56234 | Os03g0773100 | - | Detail |
| C2H3g30456 | 3:29,293,578-29,298,161 | - | C1H3g12061 | CX3g031131 | LOC_Os03g56250 | Os03g0773300 | - | Detail |
| C2H3g15647 | 3:29,309,064-29,316,610 | + | C1H3g19745 | CX3g027730 | LOC_Os03g56260 | Os03g0773600 | - | Detail |
| C2H3g25453 | 3:29,324,576-29,328,588 | + | C1H3g13238 | CX3g029516 | LOC_Os03g56270 | Os03g0773700 | - | Detail |
| C2H3g25804 | 3:29,332,253-29,335,540 | - | C1H3g14912 | CX3g025155 | LOC_Os03g56280 | Os03g0773800 | - | Detail |
| C2H3g28843 | 3:29,337,190-29,340,498 | - | C1H3g03566 | CX3g026775 | LOC_Os03g56300 | Os03g0774200 | - | Detail |
| C2H3g04435 | 3:29,341,509-29,348,807 | - | C1H3g22996 | CX3g031127 | LOC_Os03g56310 | Os03g0774300 | - | Detail |
| C2H3g26015 | 3:29,352,008-29,354,256 | + | C1H3g19261 | CX3g025412 | LOC_Os03g56320 | Os03g0774400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |