| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g30064 | 1:4,844,359-4,848,296 | - | C2H1g25446 | CX1g000033 | LOC_Os01g10450 | Os01g0201200 | - | Detail |
| C1H1g16523 | 1:4,877,117-4,878,002 | - | C2H1g03634 | CX1g002271 | LOC_Os01g10480 | Os01g0201500 | - | Detail |
| C1H1g23585 | 1:4,883,309-4,883,626 | - | C2H1g24699 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C1H1g14400 | 1:4,883,733-4,884,400 | - | C2H1g28525 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C1H1g15606 | 1:4,893,738-4,902,428 | - | C2H1g12459 | CX1g006928 | LOC_Os01g10504 | Os01g0201700 | RAG, MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1 | Detail |
| C1H1g13227 | 1:4,913,013-4,914,395 | - | C2H1g19665 | CX1g003430 | LOC_Os01g10520 | Os01g0201800 | - | Detail |
| C1H1g22249 | 1:4,924,675-4,932,481 | - | C2H1g09694 | CX1g006334 | LOC_Os01g10530 | Os01g0201900 | - | Detail |
| C1H1g17903 | 1:4,967,422-4,968,687 | + | C2H1g26674 | CX1g001589 | LOC_Os01g10580 | Os01g0202500 | - | Detail |
| C1H1g18982 | 1:4,974,967-4,975,794 | + | C2H1g25575 | - | - | Os01g0202601 | - | Detail |
| C1H1g22813 | 1:4,981,388-4,984,579 | + | C2H1g11027 | CX1g006160 | LOC_Os01g10590 | Os01g0202700 | - | Detail |
| C1H1g30411 | 1:4,991,095-4,994,109 | - | C2H1g23331 | CX1g001315 | LOC_Os01g10600 | Os01g0202800 | OsNIP1;2 | Detail |
| C1H1g09441 | 1:4,995,564-4,997,839 | - | C2H1g21358 | CX1g005369 | LOC_Os01g10610 | Os01g0203000 | - | Detail |
| C1H1g13068 | 1:5,003,013-5,004,957 | - | C2H1g27421 | CX1g004390 | LOC_Os01g10630 | Os01g0203300 | - | Detail |
| C1H1g30796 | 1:5,043,175-5,047,575 | - | C2H1g16705 | CX1g005785 | LOC_Os01g10690 | Os01g0204000 | - | Detail |
| C1H1g01843 | 1:5,051,683-5,063,908 | - | C2H1g09104 | - | - | - | - | Detail |
| C1H1g24281 | 1:5,065,518-5,068,602 | + | C2H1g06825 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| C1H1g05818 | 1:5,070,855-5,074,344 | + | C2H1g00620 | - | - | - | - | Detail |
| C1H1g15430 | 1:5,079,327-5,082,999 | + | C2H1g06825 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| C1H1g01247 | 1:5,083,533-5,086,781 | - | C2H1g29778 | CX1g002344 | LOC_Os01g10800 | Os01g0205200 | - | Detail |
| C1H1g30346 | 1:5,087,144-5,088,059 | + | C2H1g24453 | CX1g004381 | LOC_Os01g10810 | Os01g0205300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g13344 | 3:24,173,550-24,178,058 | + | C1H3g14274 | CX3g030508 | LOC_Os03g46550 | Os03g0668300 | - | Detail |
| C2H3g18832 | 3:24,203,971-24,205,232 | + | C1H3g19376 | CX3g026468 | LOC_Os03g46570 | Os03g0668500 | - | Detail |
| C2H3g11477 | 3:24,213,831-24,215,723 | + | C1H3g28696 | CX3g026071 | LOC_Os03g46600 | Os03g0668900 | - | Detail |
| C2H3g10479 | 3:24,216,601-24,223,294 | - | C1H3g23346 | CX3g026665 | LOC_Os03g46610 | Os03g0669000 | - | Detail |
| C2H3g24036 | 3:24,224,230-24,225,853 | - | C1H3g28193 | CX3g029802 | LOC_Os03g46640 | Os03g0669100 | - | Detail |
| C2H3g13024 | 3:24,227,466-24,235,365 | - | C1H3g02699 | CX3g029587 | LOC_Os03g46650 | Os03g0669200 | OsWD40-80, RGbeta1, RGB1 | Detail |
| C2H3g20768 | 3:24,236,594-24,239,600 | - | C1H3g01900 | CX3g030404 | LOC_Os03g46660 | Os03g0669300 | - | Detail |
| C2H3g23453 | 3:24,245,323-24,246,192 | + | C1H3g19071 | CX3g029156 | LOC_Os03g46110 | Os03g0663900 | EPAD1 | Detail |
| C2H3g11932 | 3:24,253,889-24,255,439 | + | C1H3g28800 | CX3g027229 | LOC_Os03g46681 | Os03g0669600 | - | Detail |
| C2H3g02411 | 3:24,258,794-24,260,654 | - | C1H3g21247 | CX3g025010 | LOC_Os03g46690 | Os03g0669900 | - | Detail |
| C2H3g12571 | 3:24,260,932-24,266,685 | + | C1H3g23850 | CX3g026592 | LOC_Os03g46710 | Os03g0669800 | - | Detail |
| C2H3g22513 | 3:24,269,843-24,270,670 | - | C1H3g12142 | CX3g030274 | LOC_Os03g46720 | Os03g0669900 | - | Detail |
| C2H3g10273 | 3:24,272,878-24,277,114 | - | C1H3g06816 | CX3g027101 | LOC_Os03g46740 | Os03g0670100 | - | Detail |
| C2H3g22557 | 3:24,277,244-24,279,797 | + | C1H3g09360 | CX3g029731 | LOC_Os03g46750 | Os03g0670200 | - | Detail |
| C2H3g25601 | 3:24,290,347-24,291,425 | + | C1H3g19284 | CX3g026475 | LOC_Os03g46770 | Os03g0670700 | - | Detail |
| C2H3g03723 | 3:24,299,282-24,300,400 | + | C1H3g25865 | CX3g027784 | LOC_Os03g46790 | Os03g0671000 | - | Detail |
| C2H3g18432 | 3:24,327,622-24,331,884 | - | C1H3g02739 | CX3g027388 | LOC_Os03g46860 | Os03g0671800 | - | Detail |
| C2H3g20149 | 3:24,352,191-24,356,436 | - | C1H3g03694 | CX3g029841 | LOC_Os03g46910 | Os03g0672300 | OsPK8 | Detail |
| C2H3g14853 | 3:24,357,013-24,359,975 | - | C1H3g13145 | CX3g027713 | LOC_Os03g46920 | Os03g0672400 | - | Detail |
| C2H3g26281 | 3:24,368,093-24,368,581 | - | C1H3g30917 | CX3g025592 | LOC_Os03g46930 | Os03g0672500 | OsEPFL4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |