| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H11g17952 | 11:1,609,839-1,610,426 | + | C2H11g06832 | CX11g014863 | LOC_Os12g04360 | Os11g0141400 | - | Detail |
| C1H11g11783 | 11:1,612,622-1,617,436 | - | C2H11g05590 | CX11g013264 | LOC_Os11g04570 | Os11g0141500 | - | Detail |
| C1H11g20784 | 11:1,626,556-1,629,355 | + | C2H11g04411 | CX11g013882 | LOC_Os11g04600 | Os11g0141900 | OsBOP2, NH5 | Detail |
| C1H11g21384 | 11:1,642,470-1,643,860 | + | C2H11g25781 | CX11g013509 | LOC_Os11g04660 | Os11g0142400 | - | Detail |
| C1H11g18499 | 11:1,646,307-1,652,072 | + | C2H11g09115 | CX11g011239 | LOC_Os11g04670 | Os11g0142500 | OsIPMS1 | Detail |
| C1H11g06875 | 11:1,661,894-1,665,032 | - | C2H12g06757 | CX11g011829 | LOC_Os11g04710 | Os11g0143200 | OsCPD1, CYP90A3, OsCPD1/CYP90A3 | Detail |
| C1H11g13552 | 11:1,668,502-1,670,105 | + | C2H11g05956 | CX11g012154 | LOC_Os11g04720 | Os11g0143300 | OSRR9, OsRR9, A-type RR | Detail |
| C1H11g20131 | 11:1,674,645-1,684,260 | - | C2H11g05899 | CX11g012125 | LOC_Os11g04740 | Os11g0143500 | - | Detail |
| C1H11g30834 | 11:1,684,543-1,685,763 | + | C2H11g08039 | CX11g013032 | LOC_Os11g04750 | Os11g0143600 | - | Detail |
| C1H11g10034 | 11:1,687,648-1,689,027 | - | C2H11g21620 | CX11g013076 | LOC_Os11g04760 | Os11g0143700 | - | Detail |
| C1H11g23225 | 11:1,690,026-1,690,325 | + | C2H12g08204 | CX11g012793 | LOC_Os11g04770 | Os11g0141400 | - | Detail |
| C1H11g19404 | 11:1,691,441-1,691,812 | + | C2H12g06925 | CX11g012793 | LOC_Os12g04570 | Os11g0144500 | - | Detail |
| C1H11g09971 | 11:1,692,643-1,692,951 | + | C2H12g08204 | CX11g012793 | LOC_Os11g04770 | Os11g0141400 | - | Detail |
| C1H11g19129 | 11:1,705,398-1,708,061 | + | C2H11g27777 | CX11g011186 | LOC_Os11g04830 | Os11g0144900 | - | Detail |
| C1H11g05659 | 11:1,708,812-1,712,638 | - | C2H11g14012 | CX11g013599 | LOC_Os11g04840 | Os11g0145000 | - | Detail |
| C1H11g09875 | 11:1,715,093-1,715,863 | - | C2H11g00679 | CX11g013962 | LOC_Os11g04850 | Os11g0145100 | - | Detail |
| C1H11g07081 | 11:1,717,207-1,718,694 | - | C2H11g19618 | CX11g011751 | LOC_Os11g04860 | Os11g0145200 | - | Detail |
| C1H11g05178 | 11:1,725,999-1,726,220 | + | C2H11g12348 | CX11g013310 | LOC_Os11g04880 | Os11g0145400 | OsUBL5.2 | Detail |
| C1H11g11818 | 11:1,728,978-1,731,707 | + | C2H11g03418 | CX11g011320 | LOC_Os11g04890 | Os11g0145700 | - | Detail |
| C1H11g20406 | 11:1,732,709-1,734,407 | - | C2H11g03421 | CX11g013204 | LOC_Os11g04935 | Os11g0146550 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g06941 | 3:6,907,336-6,907,726 | - | C1H3g19279 | CX3g029955 | - | Os03g0694500 | - | Detail |
| C2H3g25743 | 3:6,909,300-6,916,105 | - | C1H3g02498 | CX3g027180 | LOC_Os03g14420 | Os03g0248200 | - | Detail |
| C2H3g13230 | 3:6,911,574-6,912,086 | + | - | - | - | Os03g0248250 | - | Detail |
| C2H3g17020 | 3:6,918,196-6,918,735 | - | C1H3g05151 | CX3g030378 | LOC_Os03g14440 | Os03g0248500 | - | Detail |
| C2H3g16902 | 3:6,921,192-6,925,966 | - | C1H3g19724 | CX3g028551 | LOC_Os03g14450 | Os03g0248600 | - | Detail |
| C2H3g26557 | 3:6,934,995-6,936,685 | + | C1H3g21569 | CX3g029611 | LOC_Os03g14500 | Os03g0249100 | - | Detail |
| C2H3g29515 | 3:6,937,053-6,940,377 | + | C1H3g23105 | CX3g029820 | LOC_Os03g14510 | Os03g0249200 | - | Detail |
| C2H3g01671 | 3:6,943,851-6,946,831 | + | C1H3g11399 | CX3g027233 | LOC_Os03g14520 | Os03g0249300 | - | Detail |
| C2H3g21948 | 3:6,947,518-6,949,171 | + | C1H3g07919 | CX3g027067 | LOC_Os03g14530 | Os03g0249400 | - | Detail |
| C2H3g26153 | 3:6,951,963-6,953,417 | + | C1H3g04860 | CX3g026238 | LOC_Os03g14540 | Os03g0249500 | - | Detail |
| C2H3g22650 | 3:6,958,048-6,958,686 | + | C1H3g27147 | CX3g026981 | LOC_Os03g14550 | Os03g0760800 | GASR1, OsGASR1 | Detail |
| C2H3g02802 | 3:6,969,663-6,970,055 | - | C1H3g11524 | CX3g027321 | LOC_Os03g14570 | Os03g0249700 | - | Detail |
| C2H3g12837 | 3:6,974,571-6,976,865 | + | C1H3g00105 | CX3g026249 | LOC_Os03g14580 | Os03g0249900 | - | Detail |
| C2H3g11625 | 3:6,977,707-6,981,203 | - | C1H3g21182 | CX3g029360 | LOC_Os03g14590 | Os03g0250000 | - | Detail |
| C2H3g05440 | 3:6,983,794-6,989,095 | - | C1H3g01522 | CX3g030683 | LOC_Os03g14610 | Os03g0250200 | - | Detail |
| C2H3g10452 | 3:6,993,303-6,994,169 | - | C1H3g02022 | - | LOC_Os03g14615 | Os03g0250301 | - | Detail |
| C2H3g28271 | 3:7,001,169-7,001,558 | - | C1H3g21317 | CX3g028936 | LOC_Os03g14630 | Os03g0250400 | - | Detail |
| C2H3g21148 | 3:7,023,734-7,027,554 | - | C1H3g06987 | - | LOC_Os10g40790 | - | - | Detail |
| C2H3g12224 | 3:7,043,570-7,044,310 | - | C1H3g21746 | CX3g025713 | LOC_Os03g14669 | Os03g0251350 | OsHAP5C, OsNF-YC2 | Detail |
| C2H3g01417 | 3:7,048,412-7,055,522 | + | C1H3g08441 | CX3g029617 | LOC_Os03g14690 | Os03g0251500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |