| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11184 | 1:4,372,099-4,372,701 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| C1H1g27970 | 1:4,399,602-4,400,848 | + | C2H1g05843 | CX1g005975 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| C1H1g11468 | 1:4,401,063-4,403,258 | - | C2H1g21862 | CX1g003550 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| C1H1g10688 | 1:4,404,922-4,408,426 | - | C2H1g17174 | CX1g000614 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| C1H1g13152 | 1:4,410,584-4,419,547 | + | C2H1g04548 | CX1g006629 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| C1H1g06151 | 1:4,419,821-4,423,287 | - | C2H1g08327 | CX1g002400 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| C1H1g16281 | 1:4,434,056-4,436,223 | - | C2H1g05163 | CX1g002653 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| C1H1g29130 | 1:4,441,244-4,445,838 | - | C2H1g20037 | CX1g000713 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| C1H1g00947 | 1:4,468,220-4,470,798 | + | C2H1g26832 | CX1g005498 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| C1H1g03034 | 1:4,478,548-4,485,674 | - | C2H1g03615 | CX1g000509 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| C1H1g10561 | 1:4,496,706-4,497,182 | - | C2H1g17887 | CX1g001794 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| C1H1g31641 | 1:4,501,253-4,502,116 | - | C2H1g30117 | CX1g003898 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| C1H1g28666 | 1:4,508,296-4,510,691 | - | C2H1g28884 | CX1g000703 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| C1H1g30631 | 1:4,512,696-4,513,298 | + | C2H1g00669 | - | - | - | - | Detail |
| C1H1g02897 | 1:4,519,094-4,520,553 | + | C2H1g25043 | CX1g006997 | LOC_Os01g09900 | Os01g0195801 | - | Detail |
| C1H1g13131 | 1:4,531,984-4,532,278 | - | C2H1g19433 | CX12g016171 | LOC_Os12g41650 | Os12g0610200 | OsPIL11, OsbHLH102 | Detail |
| C1H1g28746 | 1:4,540,072-4,545,139 | + | C2H1g29514 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g18771 | 1:4,559,913-4,561,620 | + | C2H1g19303 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g05499 | 1:4,579,528-4,580,958 | + | C2H1g12871 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C1H1g14618 | 1:4,606,642-4,613,892 | + | C2H1g28373 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g20539 | 11:5,305,262-5,306,433 | + | C1H11g04664 | - | - | - | - | Detail |
| C2H11g22078 | 11:5,311,003-5,311,575 | + | C1H11g16980 | CX11g012389 | LOC_Os11g10820 | Os11g0214700 | - | Detail |
| C2H11g12965 | 11:5,312,232-5,312,801 | + | C1H11g16980 | CX11g012389 | LOC_Os11g10850 | Os11g0214900 | - | Detail |
| C2H11g29088 | 11:5,321,537-5,322,124 | + | C1H11g26395 | CX11g013117 | LOC_Os11g10880 | - | - | Detail |
| C2H11g11630 | 11:5,325,218-5,325,783 | - | C1H11g16096 | CX11g014986 | LOC_Os11g10890 | Os11g0215300 | - | Detail |
| C2H11g14614 | 11:5,328,312-5,331,339 | - | C1H11g05645 | CX11g014057 | LOC_Os11g10910 | Os11g0215400 | - | Detail |
| C2H11g08047 | 11:5,337,858-5,344,039 | - | C1H11g27455 | CX11g012038 | LOC_Os11g10920 | - | - | Detail |
| C2H11g23543 | 11:5,354,971-5,360,907 | + | C1H11g08086 | CX11g013871 | LOC_Os11g10980 | Os11g0216000 | - | Detail |
| C2H11g16618 | 11:5,361,279-5,362,437 | - | C1H11g21479 | CX11g012953 | LOC_Os11g10990 | Os11g0216100 | - | Detail |
| C2H11g28382 | 11:5,364,009-5,369,568 | - | C1H11g02394 | CX11g011499 | LOC_Os11g11000 | Os11g0216300 | - | Detail |
| C2H11g15592 | 11:5,385,811-5,388,934 | - | C1H11g15280 | CX11g013543 | LOC_Os11g11020 | Os11g0216400 | - | Detail |
| C2H11g21830 | 11:5,400,512-5,404,117 | + | C1H11g24262 | CX11g010984 | LOC_Os11g11050 | Os11g0216900 | - | Detail |
| C2H11g04131 | 11:5,407,135-5,410,875 | + | C1H11g14975 | CX11g011551 | LOC_Os11g11060 | Os11g0217300 | - | Detail |
| C2H11g25919 | 11:5,412,084-5,413,830 | + | C1H11g27825 | CX11g014847 | LOC_Os04g53150 | Os11g0440422 | - | Detail |
| C2H11g08951 | 11:5,414,164-5,426,942 | - | C1H11g00462 | CX11g013092 | LOC_Os11g11070 | Os11g0217500 | - | Detail |
| C2H11g22387 | 11:5,449,978-5,453,543 | + | C1H11g18670 | CX11g012257 | LOC_Os11g11100 | Os11g0218000 | - | Detail |
| C2H11g03822 | 11:5,453,972-5,456,334 | - | C1H11g15242 | - | LOC_Os11g11110 | Os11g0218100 | - | Detail |
| C2H11g14408 | 11:5,456,663-5,456,926 | - | C1H11g04937 | CX11g014970 | LOC_Os11g11130 | Os11g0218200 | - | Detail |
| C2H11g20420 | 11:5,476,056-5,479,763 | - | C1H11g30632 | CX11g011042 | LOC_Os11g11210 | Os11g0219000 | - | Detail |
| C2H11g24668 | 11:5,483,244-5,484,190 | - | C1H11g03533 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |