| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11184 | 1:4,372,099-4,372,701 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| C1H1g27970 | 1:4,399,602-4,400,848 | + | C2H1g05843 | CX1g005975 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| C1H1g11468 | 1:4,401,063-4,403,258 | - | C2H1g21862 | CX1g003550 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| C1H1g10688 | 1:4,404,922-4,408,426 | - | C2H1g17174 | CX1g000614 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| C1H1g13152 | 1:4,410,584-4,419,547 | + | C2H1g04548 | CX1g006629 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| C1H1g06151 | 1:4,419,821-4,423,287 | - | C2H1g08327 | CX1g002400 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| C1H1g16281 | 1:4,434,056-4,436,223 | - | C2H1g05163 | CX1g002653 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| C1H1g29130 | 1:4,441,244-4,445,838 | - | C2H1g20037 | CX1g000713 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| C1H1g00947 | 1:4,468,220-4,470,798 | + | C2H1g26832 | CX1g005498 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| C1H1g03034 | 1:4,478,548-4,485,674 | - | C2H1g03615 | CX1g000509 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| C1H1g10561 | 1:4,496,706-4,497,182 | - | C2H1g17887 | CX1g001794 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| C1H1g31641 | 1:4,501,253-4,502,116 | - | C2H1g30117 | CX1g003898 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| C1H1g28666 | 1:4,508,296-4,510,691 | - | C2H1g28884 | CX1g000703 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| C1H1g30631 | 1:4,512,696-4,513,298 | + | C2H1g00669 | - | - | - | - | Detail |
| C1H1g02897 | 1:4,519,094-4,520,553 | + | C2H1g25043 | CX1g006997 | LOC_Os01g09900 | Os01g0195801 | - | Detail |
| C1H1g13131 | 1:4,531,984-4,532,278 | - | C2H1g19433 | CX12g016171 | LOC_Os12g41650 | Os12g0610200 | OsPIL11, OsbHLH102 | Detail |
| C1H1g28746 | 1:4,540,072-4,545,139 | + | C2H1g29514 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g18771 | 1:4,559,913-4,561,620 | + | C2H1g19303 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g05499 | 1:4,579,528-4,580,958 | + | C2H1g12871 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C1H1g14618 | 1:4,606,642-4,613,892 | + | C2H1g28373 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g10731 | 9:12,950,090-12,952,377 | + | C1H9g00425 | CX9g057342 | LOC_Os09g25610 | Os09g0424200 | - | Detail |
| C2H9g23538 | 9:12,953,901-12,957,395 | - | C1H9g11995 | CX9g056823 | LOC_Os09g25620 | Os09g0424300 | - | Detail |
| C2H9g21679 | 9:12,964,964-12,966,064 | + | C1H9g23061 | CX9g057732 | - | - | - | Detail |
| C2H9g08773 | 9:12,968,133-12,968,381 | + | C1H9g16841 | - | - | Os09g0424501 | - | Detail |
| C2H9g17706 | 9:12,968,447-12,974,106 | + | C1H9g06900 | CX9g055223 | LOC_Os09g25640 | Os09g0424600 | - | Detail |
| C2H9g22032 | 9:12,975,485-12,984,238 | - | C1H9g10976 | CX9g054887 | LOC_Os09g25650 | Os09g0424701 | - | Detail |
| C2H9g24145 | 9:13,000,029-13,001,366 | - | C1H9g18355 | - | - | - | - | Detail |
| C2H9g19428 | 9:13,004,618-13,007,372 | + | C1H9g28855 | CX9g055237 | LOC_Os09g25760 | Os09g0425900 | OsTET13 | Detail |
| C2H9g10867 | 9:13,009,227-13,011,073 | - | C1H9g03184 | CX9g055664 | LOC_Os09g25770 | Os09g0426000 | - | Detail |
| C2H9g00227 | 9:13,011,753-13,016,435 | - | C1H9g11252 | CX9g057872 | LOC_Os09g25784 | Os09g0426100 | - | Detail |
| C2H9g10149 | 9:13,021,345-13,025,911 | - | C1H9g20388 | CX9g055177 | LOC_Os09g25810 | Os09g0426500 | - | Detail |
| C2H9g14453 | 9:13,046,445-13,051,598 | + | C1H9g07571 | CX9g056946 | LOC_Os09g25850 | Os09g0426800 | WSL2, OsGL1-1 | Detail |
| C2H9g25512 | 9:13,070,815-13,073,667 | + | C1H9g21647 | CX9g056367 | LOC_Os09g25890 | Os09g0427800 | - | Detail |
| C2H9g23436 | 9:13,085,744-13,088,896 | - | C1H9g06592 | CX9g057126 | LOC_Os09g25900 | Os09g0428000 | OsCSLC2 | Detail |
| C2H9g09090 | 9:13,103,143-13,107,909 | - | C1H9g21920 | CX9g057147 | LOC_Os09g25960 | Os09g0428300 | - | Detail |
| C2H9g03164 | 9:13,114,372-13,120,984 | - | C1H9g07601 | CX9g057147 | LOC_Os09g25980 | Os09g0428600 | - | Detail |
| C2H9g20059 | 9:13,124,323-13,127,470 | + | C1H9g14445 | - | LOC_Os09g25950 | Os09g0428900 | - | Detail |
| C2H9g24731 | 9:13,129,491-13,135,553 | - | C1H9g28274 | CX9g057147 | LOC_Os09g25960 | Os09g0429000 | - | Detail |
| C2H9g22878 | 9:13,141,320-13,141,968 | + | C1H9g10048 | - | LOC_Os09g25970 | Os09g0429100 | - | Detail |
| C2H9g26261 | 9:13,142,498-13,149,985 | - | C1H9g18274 | CX9g057147 | LOC_Os09g25980 | Os09g0429200 | OsGLR2.1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |