| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11184 | 1:4,372,099-4,372,701 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| C1H1g27970 | 1:4,399,602-4,400,848 | + | C2H1g05843 | CX1g005975 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| C1H1g11468 | 1:4,401,063-4,403,258 | - | C2H1g21862 | CX1g003550 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| C1H1g10688 | 1:4,404,922-4,408,426 | - | C2H1g17174 | CX1g000614 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| C1H1g13152 | 1:4,410,584-4,419,547 | + | C2H1g04548 | CX1g006629 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| C1H1g06151 | 1:4,419,821-4,423,287 | - | C2H1g08327 | CX1g002400 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| C1H1g16281 | 1:4,434,056-4,436,223 | - | C2H1g05163 | CX1g002653 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| C1H1g29130 | 1:4,441,244-4,445,838 | - | C2H1g20037 | CX1g000713 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| C1H1g00947 | 1:4,468,220-4,470,798 | + | C2H1g26832 | CX1g005498 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| C1H1g03034 | 1:4,478,548-4,485,674 | - | C2H1g03615 | CX1g000509 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| C1H1g10561 | 1:4,496,706-4,497,182 | - | C2H1g17887 | CX1g001794 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| C1H1g31641 | 1:4,501,253-4,502,116 | - | C2H1g30117 | CX1g003898 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| C1H1g28666 | 1:4,508,296-4,510,691 | - | C2H1g28884 | CX1g000703 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| C1H1g30631 | 1:4,512,696-4,513,298 | + | C2H1g00669 | - | - | - | - | Detail |
| C1H1g02897 | 1:4,519,094-4,520,553 | + | C2H1g25043 | CX1g006997 | LOC_Os01g09900 | Os01g0195801 | - | Detail |
| C1H1g13131 | 1:4,531,984-4,532,278 | - | C2H1g19433 | CX12g016171 | LOC_Os12g41650 | Os12g0610200 | OsPIL11, OsbHLH102 | Detail |
| C1H1g28746 | 1:4,540,072-4,545,139 | + | C2H1g29514 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g18771 | 1:4,559,913-4,561,620 | + | C2H1g19303 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C1H1g05499 | 1:4,579,528-4,580,958 | + | C2H1g12871 | CX1g005979 | LOC_Os01g10020 | Os01g0196600 | - | Detail |
| C1H1g14618 | 1:4,606,642-4,613,892 | + | C2H1g28373 | CX1g004524 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g08261 | 9:11,677,795-11,678,853 | + | C1H9g21880 | - | LOC_Os09g23334 | Os09g0397100 | - | Detail |
| C2H9g14156 | 9:11,682,775-11,685,945 | + | C1H9g26099 | - | LOC_Os09g23334 | Os09g0397100 | - | Detail |
| C2H9g00794 | 9:11,687,473-11,688,342 | + | C1H9g00991 | - | LOC_Os09g23340 | Os09g0397200 | - | Detail |
| C2H9g25337 | 9:11,706,888-11,711,285 | + | C1H9g07186 | CX9g056954 | LOC_Os09g23350 | Os09g0397300 | - | Detail |
| C2H9g27674 | 9:11,712,315-11,715,516 | - | C1H9g18089 | CX9g057642 | LOC_Os09g23360 | Os09g0397400 | - | Detail |
| C2H9g18131 | 9:11,722,079-11,727,593 | + | C1H9g24684 | CX9g057737 | LOC_Os09g23380 | Os09g0397900 | - | Detail |
| C2H9g06160 | 9:11,737,350-11,738,931 | - | C1H9g15364 | - | LOC_Os09g23334 | Os09g0397100 | - | Detail |
| C2H9g10017 | 9:11,748,539-11,749,496 | - | C1H9g09191 | CX9g057334 | - | - | - | Detail |
| C2H9g17549 | 9:11,815,453-11,816,782 | - | C1H9g14660 | CX9g057398 | LOC_Os09g23530 | Os09g0399800 | - | Detail |
| C2H9g11831 | 9:11,819,280-11,821,134 | - | C1H9g20560 | CX9g054869 | LOC_Os09g23540 | Os09g0400000 | CAD8B | Detail |
| C2H9g00236 | 9:11,827,077-11,829,014 | + | C1H9g22888 | CX9g056306 | LOC_Os09g23550 | Os09g0400300 | - | Detail |
| C2H9g21119 | 9:11,841,327-11,842,151 | - | - | CX9g057220 | LOC_Os09g23595 | Os09g0400600 | - | Detail |
| C2H9g02341 | 9:11,852,040-11,853,056 | + | C1H9g17981 | CX9g058058 | LOC_Os09g23620 | Os09g0401000 | Os2R_MYB82 | Detail |
| C2H9g11860 | 9:11,871,643-11,875,145 | + | C1H9g21372 | CX9g057812 | LOC_Os09g23640 | Os09g0401100 | ABCG21, OsABCG21, STR1 | Detail |
| C2H9g15858 | 9:11,875,876-11,877,836 | - | C1H9g02031 | CX9g055812 | LOC_Os09g23650 | Os09g0401200 | TRXH3, antiSTR1 | Detail |
| C2H9g19314 | 9:11,878,694-11,882,932 | - | C1H9g22130 | CX9g057187 | LOC_Os09g23650 | Os09g0401300 | - | Detail |
| C2H9g17598 | 9:11,901,498-11,905,301 | - | C1H9g11440 | CX9g057277 | LOC_Os09g23690 | Os09g0401600 | - | Detail |
| C2H9g22902 | 9:11,915,687-11,919,263 | + | C1H9g02407 | CX9g057072 | LOC_Os09g23720 | Os09g0401900 | - | Detail |
| C2H9g05128 | 9:11,928,953-11,929,673 | - | C1H9g30360 | CX9g055836 | LOC_Os09g23730 | Os09g0402100 | - | Detail |
| C2H9g06414 | 9:11,932,745-11,939,700 | - | C1H9g13511 | CX9g058094 | LOC_Os09g23740 | Os09g0402300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |