| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12704 | 1:4,122,902-4,126,336 | - | C2H1g19620 | CX1g003292 | LOC_Os01g09280 | Os01g0187900 | - | Detail |
| C1H1g28219 | 1:4,132,864-4,137,410 | + | C2H1g02695 | CX1g004066 | LOC_Os01g09300 | Os01g0188100 | - | Detail |
| C1H1g06279 | 1:4,138,323-4,143,537 | - | C2H1g02685 | CX1g002675 | LOC_Os01g09305 | Os01g0188200 | - | Detail |
| C1H1g23164 | 1:4,145,307-4,150,670 | - | C2H1g18571 | CX1g006611 | LOC_Os01g09320 | Os01g0188400 | - | Detail |
| C1H1g03578 | 1:4,167,014-4,168,956 | + | C2H1g19316 | CX1g004426 | LOC_Os01g09430 | Os01g0190000 | - | Detail |
| C1H1g27201 | 1:4,181,851-4,183,988 | + | C2H1g02810 | CX1g006201 | LOC_Os01g09450 | Os01g0190300 | - | Detail |
| C1H1g07672 | 1:4,185,404-4,187,904 | - | C2H1g19091 | CX1g007213 | LOC_Os01g09460 | Os01g0190400 | - | Detail |
| C1H1g15113 | 1:4,193,535-4,195,266 | + | C2H1g26000 | CX1g004108 | LOC_Os01g09470 | Os01g0190500 | GW5L | Detail |
| C1H1g06870 | 1:4,199,867-4,207,905 | + | C2H1g13364 | CX1g003198 | LOC_Os01g14770 | - | - | Detail |
| C1H1g00997 | 1:4,225,143-4,227,006 | - | C2H1g13703 | CX1g002686 | LOC_Os01g09510 | Os01g0191100 | - | Detail |
| C1H1g00651 | 1:4,234,539-4,236,474 | + | C2H1g17347 | CX1g000313 | LOC_Os01g09500 | Os01g0191000 | - | Detail |
| C1H1g26240 | 1:4,236,692-4,238,342 | - | C2H1g04431 | CX1g000803 | LOC_Os01g09540 | Os01g0191200 | - | Detail |
| C1H1g18220 | 1:4,244,795-4,250,385 | - | C2H1g28549 | CX1g002554 | LOC_Os01g09550 | Os01g0191300 | OsNAC006 | Detail |
| C1H1g10376 | 1:4,262,976-4,268,394 | + | C2H1g26380 | CX1g003362 | LOC_Os01g09560 | Os01g0191500 | - | Detail |
| C1H1g21626 | 1:4,277,004-4,280,788 | + | C2H1g02135 | CX1g007135 | LOC_Os01g09570 | Os01g0191700 | - | Detail |
| C1H1g30896 | 1:4,281,723-4,284,862 | - | C2H1g00634 | CX1g004403 | LOC_Os01g09580 | Os01g0191800 | - | Detail |
| C1H1g20220 | 1:4,289,751-4,290,694 | - | C2H1g29230 | CX1g007052 | LOC_Os01g09590 | Os01g0191900 | Os2R_MYB4 | Detail |
| C1H1g28550 | 1:4,332,080-4,333,603 | - | C2H1g07972 | CX1g000801 | LOC_Os01g09640 | Os01g0192300 | - | Detail |
| C1H1g14238 | 1:4,349,054-4,352,184 | - | C2H1g16065 | CX1g006171 | LOC_Os01g09670 | Os01g0192600 | - | Detail |
| C1H1g03026 | 1:4,371,099-4,372,019 | - | C2H1g19735 | CX1g005144 | LOC_Os01g09700 | Os01g0192900 | OS-ACS5 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05410 | 3:2,813,014-2,821,309 | + | C1H3g11682 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C2H3g11481 | 3:2,821,809-2,827,231 | - | C1H3g12948 | CX3g029615 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| C2H3g04338 | 3:2,839,593-2,841,892 | + | C1H3g19950 | CX3g031150 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| C2H3g04897 | 3:2,849,650-2,852,046 | + | C1H3g16884 | CX3g029485 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| C2H3g20671 | 3:2,857,405-2,857,866 | - | C1H3g31680 | CX3g029738 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| C2H3g16543 | 3:2,873,484-2,875,711 | + | C1H3g19723 | CX3g029835 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| C2H3g18983 | 3:2,877,424-2,879,447 | + | C1H3g17239 | CX3g029527 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |
| C2H3g18594 | 3:2,887,211-2,888,499 | + | - | - | - | - | - | Detail |
| C2H3g18217 | 3:2,889,436-2,891,957 | + | C1H3g19807 | CX3g030288 | LOC_Os03g06654 | Os03g0162000 | COW1, OsCOW1, oscow1, OsYUC8, NAL7, OsYUCCA8, FMO, OsFMO(t) | Detail |
| C2H3g01853 | 3:2,903,303-2,903,873 | + | C1H3g07386 | CX3g030521 | LOC_Os03g06670 | Os03g0162200 | - | Detail |
| C2H3g21314 | 3:2,911,394-2,912,892 | + | C1H3g24759 | CX3g025819 | LOC_Os03g06680 | Os03g0162500 | OsDUF50604 | Detail |
| C2H3g14410 | 3:2,930,448-2,934,898 | + | C1H3g16348 | CX3g029826 | LOC_Os03g06705 | Os03g0162800 | - | Detail |
| C2H3g28634 | 3:2,935,603-2,936,034 | + | C1H3g31273 | - | - | - | - | Detail |
| C2H3g14053 | 3:2,936,052-2,938,523 | + | C1H3g16422 | CX3g027686 | LOC_Os03g06710 | Os03g0162900 | - | Detail |
| C2H3g03063 | 3:2,941,941-2,943,677 | + | C1H3g04672 | - | - | Os03g0163000 | - | Detail |
| C2H3g15393 | 3:2,944,725-2,952,303 | + | C1H3g10390 | CX3g025042 | LOC_Os03g06720 | Os03g0163100 | - | Detail |
| C2H3g06714 | 3:2,952,491-2,953,976 | + | C1H3g23541 | CX3g025042 | LOC_Os03g06730 | Os03g0163200 | - | Detail |
| C2H3g22693 | 3:2,954,872-2,959,579 | + | C1H3g17347 | CX3g026090 | LOC_Os03g06740 | Os03g0163300 | - | Detail |
| C2H3g01887 | 3:2,960,166-2,961,935 | - | C1H3g06657 | CX3g029299 | LOC_Os03g06750 | Os03g0163400 | - | Detail |
| C2H3g29355 | 3:2,964,329-2,966,695 | + | C1H3g03297 | CX3g026455 | LOC_Os03g06760 | Os03g0163500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |