| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g05447 | 1:3,897,349-3,900,750 | + | C2H1g11034 | CX1g004726 | LOC_Os01g08850 | Os01g0184000 | - | Detail |
| C1H1g08258 | 1:3,903,267-3,907,393 | - | C2H1g25930 | CX1g006276 | LOC_Os01g08930 | Os01g0184500 | - | Detail |
| C1H1g29228 | 1:3,913,630-3,914,392 | + | C2H1g18729 | CX1g005580 | LOC_Os01g08950 | Os01g0715800 | - | Detail |
| C1H1g07230 | 1:3,914,526-3,917,510 | - | C2H1g08065 | CX1g001833 | LOC_Os01g08960 | Os01g0184800 | - | Detail |
| C1H1g00754 | 1:3,917,719-3,924,507 | + | C2H1g16483 | CX1g001927 | LOC_Os01g08970 | Os01g0184900 | - | Detail |
| C1H1g18602 | 1:3,925,864-3,929,743 | + | C2H1g08712 | CX1g006005 | LOC_Os01g08990 | Os01g0185100 | - | Detail |
| C1H1g09937 | 1:3,931,008-3,937,066 | - | C2H1g10102 | CX1g000003 | LOC_Os01g09000 | Os01g0185200 | - | Detail |
| C1H1g12656 | 1:3,944,739-3,949,168 | + | C2H1g17955 | CX1g005455 | LOC_Os01g09010 | Os01g0185300 | - | Detail |
| C1H1g03940 | 1:3,950,356-3,956,527 | + | C2H1g17802 | CX1g004120 | LOC_Os01g09020 | Os01g0185400 | OsCBE1 | Detail |
| C1H1g23338 | 1:3,959,401-3,962,917 | + | C2H1g12463 | CX1g004591 | LOC_Os01g09030 | Os01g0185500 | - | Detail |
| C1H1g06268 | 1:3,972,573-3,974,529 | + | C2H1g25484 | CX1g000928 | LOC_Os01g09080 | Os01g0185900 | - | Detail |
| C1H1g00047 | 1:3,988,556-3,991,526 | - | C2H1g05521 | CX1g004425 | LOC_Os01g09120 | Os01g0186200 | - | Detail |
| C1H1g06584 | 1:4,001,275-4,002,665 | - | C2H1g14524 | - | - | - | - | Detail |
| C1H1g20061 | 1:4,004,571-4,011,310 | - | - | - | - | - | - | Detail |
| C1H1g09605 | 1:4,035,938-4,045,487 | - | C2H1g24918 | CX1g001893 | LOC_Os01g09200 | Os01g0186700 | OsSTK38, TINY1 | Detail |
| C1H1g07377 | 1:4,060,793-4,062,834 | + | C2H1g05283 | CX1g002460 | LOC_Os01g09230 | Os01g0187000 | - | Detail |
| C1H1g28342 | 1:4,080,979-4,092,678 | + | C2H1g23178 | CX1g002282 | LOC_Os01g09246 | Os01g0187400 | - | Detail |
| C1H1g13448 | 1:4,094,957-4,098,718 | + | C2H1g13013 | CX1g002953 | LOC_Os01g09252 | Os01g0187500 | - | Detail |
| C1H1g18332 | 1:4,102,891-4,103,172 | - | C2H1g05231 | CX1g004008 | LOC_Os01g09260 | Os01g0197700 | Gn1a, OsCKX2 | Detail |
| C1H1g10697 | 1:4,103,286-4,105,381 | - | C2H1g05231 | CX1g004008 | LOC_Os01g09260 | Os01g0187600 | OsCKX1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g18098 | 4:22,366,357-22,367,357 | + | C1H4g27983 | CX4g036341 | LOC_Os04g43710 | Os04g0517500 | - | Detail |
| C2H4g25250 | 4:22,371,472-22,373,949 | - | C1H4g02633 | CX4g031725 | LOC_Os04g43730 | Os04g0517700 | - | Detail |
| C2H4g17137 | 4:22,383,999-22,387,231 | - | C1H4g03662 | CX4g034141 | LOC_Os04g54890 | Os02g0517900 | - | Detail |
| C2H4g28659 | 4:22,395,708-22,396,055 | + | - | CX4g031509 | LOC_Os04g43740 | Os04g0517900 | - | Detail |
| C2H4g18845 | 4:22,398,118-22,401,716 | - | C1H4g21239 | CX4g032795 | LOC_Os04g43750 | Os04g0518000 | - | Detail |
| C2H4g17450 | 4:22,406,282-22,409,267 | - | C1H4g17678 | CX4g031424 | LOC_Os04g43760 | Os04g0518100 | - | Detail |
| C2H4g28869 | 4:22,415,229-22,417,846 | - | C1H4g22637 | CX4g031711 | LOC_Os04g43800 | Os04g0518400 | OsPAL6 | Detail |
| C2H4g10523 | 4:22,426,478-22,429,294 | - | C1H4g07857 | - | LOC_Os04g43824 | Os04g0518650 | - | Detail |
| C2H4g12982 | 4:22,438,115-22,441,881 | + | C1H4g21094 | CX4g035278 | LOC_Os04g43840 | Os04g0518800 | LABA1, LOGL6, OsLOGL6, An-2 | Detail |
| C2H4g03913 | 4:22,457,073-22,459,758 | + | C1H4g30028 | CX4g031681 | LOC_Os04g43910 | Os04g0519700 | ARF10, qSE4 | Detail |
| C2H4g13261 | 4:22,466,807-22,478,296 | - | C1H4g09015 | CX4g033896 | LOC_Os04g43916 | Os04g0519900 | - | Detail |
| C2H4g00328 | 4:22,479,350-22,483,931 | - | C1H4g07978 | CX4g033084 | LOC_Os04g43922 | Os04g0520000 | - | Detail |
| C2H4g21426 | 4:22,490,205-22,490,729 | - | - | CX4g032805 | LOC_Os04g43990 | Os04g0520700 | OsS40-13 | Detail |
| C2H4g11598 | 4:22,496,349-22,497,743 | + | C1H4g05728 | CX4g034414 | LOC_Os04g44030 | Os04g0520900 | - | Detail |
| C2H4g13133 | 4:22,504,372-22,506,431 | + | C1H4g29455 | CX4g032514 | LOC_Os04g44060 | Os04g0521100 | OsPIP2;3 | Detail |
| C2H4g21649 | 4:22,507,177-22,507,470 | - | C1H4g20974 | - | - | - | - | Detail |
| C2H4g30421 | 4:22,507,757-22,508,776 | - | C1H4g01962 | - | - | - | - | Detail |
| C2H4g17426 | 4:22,510,893-22,512,892 | + | C1H4g05956 | CX4g034857 | LOC_Os04g44070 | Os04g0521300 | - | Detail |
| C2H4g25112 | 4:22,513,844-22,516,546 | + | C1H4g04229 | CX4g032134 | LOC_Os04g44090 | Os04g0521600 | - | Detail |
| C2H4g09903 | 4:22,517,122-22,517,592 | + | - | CX4g032134 | LOC_Os04g44100 | Os04g0521700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |