| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g08369 | 1:3,748,267-3,754,055 | + | - | - | - | - | - | Detail |
| C1H1g04838 | 1:3,753,234-3,753,816 | - | - | - | - | Os01g0180850 | - | Detail |
| C1H1g04959 | 1:3,757,888-3,760,839 | + | C2H1g23466 | CX1g001824 | LOC_Os01g08570 | Os01g0180900 | PEG1 | Detail |
| C1H1g21972 | 1:3,762,367-3,763,817 | + | C2H1g27267 | CX1g001824 | LOC_Os01g08570 | Os01g0180900 | PEG1 | Detail |
| C1H1g29421 | 1:3,766,711-3,770,102 | - | C2H1g05619 | CX1g003309 | LOC_Os01g08580 | Os01g0181000 | - | Detail |
| C1H1g05943 | 1:3,771,927-3,774,296 | + | C2H1g09388 | CX1g005635 | LOC_Os01g08650 | Os01g0182100 | - | Detail |
| C1H1g28299 | 1:3,781,948-3,784,086 | - | C2H1g25325 | CX1g002190 | LOC_Os01g08660 | Os01g0182200 | OsSIP1 | Detail |
| C1H1g29977 | 1:3,791,796-3,793,847 | - | C2H1g08590 | CX1g002385 | LOC_Os01g08680 | Os01g0182400 | - | Detail |
| C1H1g01569 | 1:3,795,324-3,796,892 | + | C2H1g03691 | CX1g002667 | LOC_Os01g08690 | Os01g0182500 | - | Detail |
| C1H1g31395 | 1:3,797,942-3,807,166 | - | C2H1g22882 | CX1g006236 | LOC_Os01g08700 | Os01g0182600 | - | Detail |
| C1H1g26932 | 1:3,815,856-3,823,389 | - | C2H1g00342 | CX1g007148 | LOC_Os01g08710 | Os01g0182700 | OsWRKY102 | Detail |
| C1H1g19772 | 1:3,829,241-3,847,352 | + | C2H1g11324 | CX1g003782 | LOC_Os01g08750 | Os01g0182900 | - | Detail |
| C1H1g02231 | 1:3,849,071-3,851,240 | + | C2H1g13544 | CX1g000301 | LOC_Os01g08760 | Os01g0183000 | - | Detail |
| C1H1g18568 | 1:3,851,913-3,852,441 | + | C2H1g29251 | - | - | - | - | Detail |
| C1H1g31443 | 1:3,852,446-3,856,102 | + | C2H1g26288 | CX1g000793 | LOC_Os01g08770 | Os01g0183100 | - | Detail |
| C1H1g26343 | 1:3,856,799-3,861,807 | - | C2H1g17275 | CX1g007243 | LOC_Os01g08780 | Os01g0183300 | - | Detail |
| C1H1g28662 | 1:3,871,180-3,872,828 | + | C2H1g06833 | CX1g000827 | LOC_Os01g08800 | Os01g0183500 | - | Detail |
| C1H1g05359 | 1:3,877,677-3,879,576 | - | C2H1g27975 | CX1g000642 | LOC_Os01g08814 | Os01g0183633 | - | Detail |
| C1H1g07821 | 1:3,883,219-3,885,121 | - | C2H1g27122 | CX1g003359 | LOC_Os01g08820 | Os01g0218800 | - | Detail |
| C1H1g01391 | 1:3,888,109-3,890,234 | + | C2H1g25026 | CX1g004917 | LOC_Os01g08830 | Os01g0183800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g02353 | 1:11,674,300-11,679,910 | + | C1H1g28713 | CX1g000663 | LOC_Os01g24060 | Os01g0343200 | - | Detail |
| C2H1g26949 | 1:11,685,554-11,687,349 | + | C1H1g18384 | CX1g001080 | LOC_Os01g24070 | Os01g0343300 | OsGATA8 | Detail |
| C2H1g05738 | 1:11,696,982-11,699,421 | - | C1H1g01015 | CX1g003896 | LOC_Os01g24090 | Os01g0343500 | - | Detail |
| C2H1g07085 | 1:11,827,376-11,830,076 | + | - | - | LOC_Os01g27449 | Os01g0372100 | - | Detail |
| C2H1g16748 | 1:11,899,919-11,901,719 | - | C1H1g27053 | CX1g002181 | LOC_Os01g24490 | Os01g0347200 | - | Detail |
| C2H1g05112 | 1:11,937,505-11,943,811 | + | C1H1g27449 | CX1g005895 | LOC_Os01g24500 | Os01g0347300 | - | Detail |
| C2H1g30571 | 1:11,948,445-11,952,134 | - | C1H1g01597 | CX1g001516 | LOC_Os06g08450 | Os06g0183200 | HK2, OHK1, HK, OsHK2, Ohk1 | Detail |
| C2H1g15253 | 1:11,954,093-11,955,767 | - | - | - | - | - | - | Detail |
| C2H1g16729 | 1:11,956,738-11,959,165 | - | - | - | - | - | - | Detail |
| C2H1g03429 | 1:12,036,103-12,038,238 | + | C1H1g12059 | CX1g004622 | LOC_Os01g26980 | Os01g0738500 | - | Detail |
| C2H1g13415 | 1:12,067,581-12,069,632 | + | C1H1g13768 | CX1g001811 | - | Os01g0527900 | - | Detail |
| C2H1g07465 | 1:12,086,685-12,087,860 | + | C1H1g21970 | CX1g002117 | LOC_Os01g24420 | Os01g0346250 | - | Detail |
| C2H1g25406 | 1:12,110,695-12,115,118 | + | C1H1g27382 | CX1g002994 | LOC_Os01g24470 | Os01g0347000 | - | Detail |
| C2H1g02246 | 1:12,115,613-12,120,143 | - | C1H1g08071 | CX1g000129 | LOC_Os01g24480 | Os01g0347100 | - | Detail |
| C2H1g19331 | 1:12,125,101-12,126,796 | - | C1H1g27053 | CX1g002181 | LOC_Os01g24490 | Os01g0347200 | - | Detail |
| C2H1g13817 | 1:12,132,010-12,134,037 | + | C1H1g27449 | CX1g006871 | LOC_Os01g24500 | Os01g0347300 | - | Detail |
| C2H1g12753 | 1:12,181,907-12,186,318 | - | C1H1g04145 | CX1g004547 | - | Os01g0852650 | - | Detail |
| C2H1g06141 | 1:12,187,581-12,188,746 | - | C1H1g09482 | CX1g001042 | LOC_Os01g24600 | Os01g0347500 | - | Detail |
| C2H1g29017 | 1:12,191,860-12,192,978 | + | C1H1g19481 | CX1g002830 | LOC_Os01g24560 | Os01g0347600 | - | Detail |
| C2H1g00502 | 1:12,208,552-12,209,729 | + | C1H1g19455 | CX1g004946 | LOC_Os01g24550 | Os01g0348000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |