| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31867 | 1:3,355,804-3,359,143 | + | C2H1g14488 | CX1g001175 | LOC_Os01g07950 | Os01g0174900 | - | Detail |
| C1H1g24398 | 1:3,359,730-3,363,725 | - | C2H1g22647 | CX1g003986 | LOC_Os01g07960 | Os01g0175000 | - | Detail |
| C1H1g18087 | 1:3,374,875-3,380,717 | - | C2H1g30617 | CX1g004096 | LOC_Os01g07980 | Os01g0175400 | - | Detail |
| C1H1g05589 | 1:3,384,746-3,389,181 | - | C2H1g23906 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g28606 | 1:3,402,750-3,407,351 | - | C2H1g04507 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g24276 | 1:3,417,629-3,419,654 | + | C2H1g10547 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C1H1g30308 | 1:3,420,696-3,422,479 | + | C2H1g11095 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C1H1g02538 | 1:3,423,536-3,425,537 | + | C2H1g17460 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C1H1g22640 | 1:3,432,147-3,436,739 | + | C2H1g17877 | CX1g005143 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| C1H1g06103 | 1:3,436,955-3,440,221 | - | C2H1g05536 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C1H1g20288 | 1:3,456,019-3,456,207 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g03923 | 1:3,456,277-3,457,890 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g31422 | 1:3,465,359-3,466,757 | - | C2H1g06706 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C1H1g14865 | 1:3,476,824-3,485,228 | + | C2H1g26258 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C1H1g25960 | 1:3,487,096-3,495,960 | + | C2H1g16195 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C1H1g22558 | 1:3,504,929-3,506,165 | - | C2H1g03295 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C1H1g04757 | 1:3,538,810-3,548,613 | - | C2H1g12398 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C1H1g28750 | 1:3,557,094-3,562,085 | - | C2H1g19074 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C1H1g30727 | 1:3,563,709-3,567,504 | + | C2H1g18970 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| C1H1g15139 | 1:3,568,178-3,570,121 | + | C2H1g21666 | CX1g001768 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g16183 | 2:24,688,259-24,692,564 | + | C1H2g27732 | CX2g024885 | LOC_Os02g43920 | Os02g0656300 | - | Detail |
| C2H2g03356 | 2:24,696,755-24,700,696 | + | C1H2g03674 | CX2g020033 | LOC_Os02g43930 | Os02g0656500 | - | Detail |
| C2H2g30399 | 2:24,701,728-24,702,615 | + | C1H2g23870 | CX2g021598 | LOC_Os02g43940 | Os02g0656600 | - | Detail |
| C2H2g16735 | 2:24,723,205-24,723,882 | + | C1H2g18536 | CX2g021598 | LOC_Os02g43970 | Os02g0657000 | ARAG1, OsAP211 | Detail |
| C2H2g18352 | 2:24,739,834-24,740,874 | + | - | CX2g019909 | LOC_Os02g44000 | Os02g0657600 | - | Detail |
| C2H2g24603 | 2:24,741,797-24,744,408 | - | C1H2g25776 | CX2g019542 | LOC_Os02g44010 | Os02g0657700 | - | Detail |
| C2H2g19825 | 2:24,748,795-24,752,828 | + | C1H2g22036 | - | - | - | - | Detail |
| C2H2g25514 | 2:24,755,875-24,757,389 | - | C1H2g03030 | CX2g023520 | LOC_Os02g44040 | Os02g0658000 | - | Detail |
| C2H2g13342 | 2:24,758,941-24,759,871 | - | C1H2g22002 | CX2g020097 | LOC_Os02g44080 | Os02g0658100 | - | Detail |
| C2H2g08645 | 2:24,764,728-24,765,230 | - | C1H2g22411 | CX2g022253 | LOC_Os02g44090 | Os02g0658200 | - | Detail |
| C2H2g10464 | 2:24,768,574-24,768,996 | + | C1H2g05242 | CX2g022180 | LOC_Os02g44100 | Os02g0658300 | - | Detail |
| C2H2g29171 | 2:24,773,565-24,780,462 | - | C1H2g07763 | CX2g024807 | LOC_Os02g44102 | Os02g0658500 | - | Detail |
| C2H2g08369 | 2:24,783,123-24,784,517 | + | C1H2g23025 | CX2g019846 | LOC_Os02g44106 | Os02g0658600 | - | Detail |
| C2H2g19921 | 2:24,795,935-24,797,693 | + | C1H2g29919 | CX2g021187 | LOC_Os02g44108 | Os02g0658800 | - | Detail |
| C2H2g21677 | 2:24,804,145-24,808,727 | - | C1H2g30940 | CX2g020003 | LOC_Os02g44111 | Os02g0658900 | - | Detail |
| C2H2g22356 | 2:24,809,854-24,811,725 | + | C1H2g19051 | CX2g024930 | LOC_Os02g44120 | Os02g0659100 | - | Detail |
| C2H2g05907 | 2:24,827,001-24,828,020 | + | C1H2g26310 | CX2g020380 | LOC_Os02g44130 | Os02g0659500 | - | Detail |
| C2H2g12408 | 2:24,835,823-24,838,416 | + | C1H2g29427 | CX2g019492 | LOC_Os02g44132 | Os02g0659600 | - | Detail |
| C2H2g24443 | 2:24,839,349-24,843,883 | - | C1H2g00843 | - | LOC_Os02g44134 | Os02g0659700 | - | Detail |
| C2H2g27872 | 2:24,847,606-24,850,918 | - | C1H2g04906 | - | LOC_Os02g44136 | Os02g0659700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |