| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31867 | 1:3,355,804-3,359,143 | + | C2H1g14488 | CX1g001175 | LOC_Os01g07950 | Os01g0174900 | - | Detail |
| C1H1g24398 | 1:3,359,730-3,363,725 | - | C2H1g22647 | CX1g003986 | LOC_Os01g07960 | Os01g0175000 | - | Detail |
| C1H1g18087 | 1:3,374,875-3,380,717 | - | C2H1g30617 | CX1g004096 | LOC_Os01g07980 | Os01g0175400 | - | Detail |
| C1H1g05589 | 1:3,384,746-3,389,181 | - | C2H1g23906 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g28606 | 1:3,402,750-3,407,351 | - | C2H1g04507 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g24276 | 1:3,417,629-3,419,654 | + | C2H1g10547 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C1H1g30308 | 1:3,420,696-3,422,479 | + | C2H1g11095 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C1H1g02538 | 1:3,423,536-3,425,537 | + | C2H1g17460 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C1H1g22640 | 1:3,432,147-3,436,739 | + | C2H1g17877 | CX1g005143 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| C1H1g06103 | 1:3,436,955-3,440,221 | - | C2H1g05536 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C1H1g20288 | 1:3,456,019-3,456,207 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g03923 | 1:3,456,277-3,457,890 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g31422 | 1:3,465,359-3,466,757 | - | C2H1g06706 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C1H1g14865 | 1:3,476,824-3,485,228 | + | C2H1g26258 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C1H1g25960 | 1:3,487,096-3,495,960 | + | C2H1g16195 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C1H1g22558 | 1:3,504,929-3,506,165 | - | C2H1g03295 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C1H1g04757 | 1:3,538,810-3,548,613 | - | C2H1g12398 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C1H1g28750 | 1:3,557,094-3,562,085 | - | C2H1g19074 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C1H1g30727 | 1:3,563,709-3,567,504 | + | C2H1g18970 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| C1H1g15139 | 1:3,568,178-3,570,121 | + | C2H1g21666 | CX1g001768 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g30209 | 2:8,804,939-8,808,384 | - | C1H2g23726 | CX2g022614 | LOC_Os02g17150 | Os02g0271000 | - | Detail |
| C2H2g04784 | 2:8,837,674-8,841,432 | - | C1H2g25750 | CX2g022614 | LOC_Os02g17150 | Os02g0271600 | - | Detail |
| C2H2g00807 | 2:8,854,230-8,858,432 | + | C1H2g30652 | CX2g019061 | LOC_Os02g17190 | Os02g0271900 | Os2R_MYB23 | Detail |
| C2H2g30572 | 2:8,888,406-8,892,999 | + | C1H2g30810 | CX2g022903 | LOC_Os02g17230 | Os02g0272200 | OsYUC12 | Detail |
| C2H2g19816 | 2:8,896,882-8,898,685 | + | C1H2g26000 | CX2g021864 | LOC_Os02g17240 | Os02g0272300 | OsRopGEF3 | Detail |
| C2H2g10400 | 2:8,899,032-8,904,292 | - | C1H2g16365 | CX2g021838 | LOC_Os02g17250 | Os02g0272400 | - | Detail |
| C2H2g25808 | 2:8,905,606-8,906,895 | - | - | - | LOC_Os02g18920 | - | - | Detail |
| C2H2g16498 | 2:8,907,716-8,908,806 | + | - | - | - | - | - | Detail |
| C2H2g17960 | 2:8,908,917-8,913,364 | - | - | CX12g015312 | LOC_Os03g13110 | - | - | Detail |
| C2H2g09408 | 2:8,926,183-8,932,064 | + | C1H2g26504 | CX2g021874 | LOC_Os02g17280 | Os02g0272600 | - | Detail |
| C2H2g28402 | 2:8,944,385-8,948,381 | + | C1H2g30730 | CX2g024058 | LOC_Os02g17330 | Os02g0273100 | - | Detail |
| C2H2g06272 | 2:8,978,425-8,986,700 | + | C1H2g21358 | CX2g020684 | LOC_Os02g17320 | Os02g0273000 | - | Detail |
| C2H2g20012 | 2:8,987,171-8,992,581 | + | C1H2g17426 | CX2g024571 | LOC_Os02g17304 | Os02g0272900 | Xo2 | Detail |
| C2H2g19023 | 2:9,013,242-9,014,422 | + | - | - | LOC_Os02g17292 | Os02g0272800 | - | Detail |
| C2H2g04235 | 2:9,014,500-9,015,382 | + | - | - | - | Os02g0552700 | - | Detail |
| C2H2g25389 | 2:9,035,497-9,040,913 | + | C1H2g19815 | CX2g018979 | LOC_Os02g17350 | Os02g0273700 | - | Detail |
| C2H2g13206 | 2:9,044,516-9,048,865 | - | C1H2g27079 | CX2g023608 | LOC_Os02g17360 | Os02g0273800 | - | Detail |
| C2H2g22699 | 2:9,050,705-9,052,724 | - | C1H2g07174 | CX2g022716 | LOC_Os02g17370 | Os02g0273900 | - | Detail |
| C2H2g10243 | 2:9,057,248-9,060,101 | + | C1H2g21374 | - | LOC_Os02g17380 | Os02g0274000 | RF2, Rf2 (Rfx), Rfx, Rf2 | Detail |
| C2H2g22313 | 2:9,063,041-9,071,886 | + | C1H2g00399 | CX2g024760 | LOC_Os02g17390 | Os02g0274100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |