| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31867 | 1:3,355,804-3,359,143 | + | C2H1g14488 | CX1g001175 | LOC_Os01g07950 | Os01g0174900 | - | Detail |
| C1H1g24398 | 1:3,359,730-3,363,725 | - | C2H1g22647 | CX1g003986 | LOC_Os01g07960 | Os01g0175000 | - | Detail |
| C1H1g18087 | 1:3,374,875-3,380,717 | - | C2H1g30617 | CX1g004096 | LOC_Os01g07980 | Os01g0175400 | - | Detail |
| C1H1g05589 | 1:3,384,746-3,389,181 | - | C2H1g23906 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g28606 | 1:3,402,750-3,407,351 | - | C2H1g04507 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C1H1g24276 | 1:3,417,629-3,419,654 | + | C2H1g10547 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C1H1g30308 | 1:3,420,696-3,422,479 | + | C2H1g11095 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C1H1g02538 | 1:3,423,536-3,425,537 | + | C2H1g17460 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C1H1g22640 | 1:3,432,147-3,436,739 | + | C2H1g17877 | CX1g005143 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| C1H1g06103 | 1:3,436,955-3,440,221 | - | C2H1g05536 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C1H1g20288 | 1:3,456,019-3,456,207 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g03923 | 1:3,456,277-3,457,890 | + | C2H1g25065 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C1H1g31422 | 1:3,465,359-3,466,757 | - | C2H1g06706 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C1H1g14865 | 1:3,476,824-3,485,228 | + | C2H1g26258 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C1H1g25960 | 1:3,487,096-3,495,960 | + | C2H1g16195 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C1H1g22558 | 1:3,504,929-3,506,165 | - | C2H1g03295 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C1H1g04757 | 1:3,538,810-3,548,613 | - | C2H1g12398 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C1H1g28750 | 1:3,557,094-3,562,085 | - | C2H1g19074 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C1H1g30727 | 1:3,563,709-3,567,504 | + | C2H1g18970 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| C1H1g15139 | 1:3,568,178-3,570,121 | + | C2H1g21666 | CX1g001768 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g00402 | 6:4,574,272-4,574,655 | - | - | - | - | - | - | Detail |
| C2H6g17419 | 6:4,593,527-4,597,235 | + | C1H6g14849 | CX6g043421 | LOC_Os06g10650 | Os06g0208700 | - | Detail |
| C2H6g13350 | 6:4,598,397-4,601,427 | + | C1H6g23556 | CX6g043324 | LOC_Os06g10660 | Os06g0208800 | LYP6, Os-LYP6, OsLYP6 | Detail |
| C2H6g27092 | 6:4,607,630-4,609,000 | + | C1H6g25354 | CX6g045918 | LOC_Os06g10670 | Os06g0209100 | - | Detail |
| C2H6g18588 | 6:4,614,165-4,623,755 | - | C1H6g29444 | CX6g043196 | LOC_Os06g10690 | Os06g0209300 | - | Detail |
| C2H6g30171 | 6:4,625,110-4,625,442 | - | - | CX6g042745 | LOC_Os06g10700 | Os06g0209400 | - | Detail |
| C2H6g20867 | 6:4,626,949-4,627,851 | + | - | CX6g042078 | LOC_Os06g10710 | Os02g0768700 | - | Detail |
| C2H6g20741 | 6:4,644,838-4,647,814 | + | C1H6g09344 | CX6g045030 | LOC_Os06g10750 | Os06g0210000 | - | Detail |
| C2H6g09939 | 6:4,650,719-4,653,259 | + | C1H6g15422 | CX6g044963 | LOC_Os06g10760 | Os06g0210100 | - | Detail |
| C2H6g00045 | 6:4,662,143-4,665,877 | + | C1H6g05633 | CX6g041985 | LOC_Os06g10770 | Os06g0210200 | - | Detail |
| C2H6g03873 | 6:4,670,634-4,671,326 | + | C1H6g22658 | CX6g045597 | LOC_Os06g10780 | Os06g0166400 | - | Detail |
| C2H6g16171 | 6:4,676,912-4,679,035 | - | C1H6g00451 | CX6g045137 | LOC_Os06g10790 | Os06g0210400 | - | Detail |
| C2H6g14969 | 6:4,681,557-4,686,154 | + | C1H6g28588 | CX6g042263 | LOC_Os06g10810 | Os06g0210500 | OsMPT3;2 | Detail |
| C2H6g10890 | 6:4,686,740-4,687,381 | + | C1H6g11807 | CX6g045506 | LOC_Os06g10820 | Os06g0184000 | OsRHL1 | Detail |
| C2H6g23532 | 6:4,701,212-4,704,019 | + | C1H6g13425 | CX6g043349 | LOC_Os06g10850 | Os06g0210900 | - | Detail |
| C2H6g27273 | 6:4,704,971-4,705,941 | + | C1H6g17556 | CX6g042936 | LOC_Os06g10860 | Os06g0137650 | - | Detail |
| C2H6g14016 | 6:4,708,025-4,708,882 | - | - | CX6g044378 | LOC_Os06g10870 | Os06g0199000 | - | Detail |
| C2H6g15173 | 6:4,718,549-4,722,849 | + | C1H6g02776 | CX6g045664 | LOC_Os06g10880 | Os06g0211200 | - | Detail |
| C2H6g18394 | 6:4,726,305-4,727,237 | + | C1H6g25517 | CX6g044980 | LOC_Os06g10890 | Os06g0211300 | - | Detail |
| C2H6g21021 | 6:4,736,666-4,739,987 | + | C1H6g00811 | CX6g042836 | LOC_Os06g10910 | Os06g0211600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |