| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g24870 | 1:38,133,777-38,135,067 | - | C2H1g29036 | CX1g003882 | LOC_Os01g74350 | Os01g0974800 | - | Detail |
| C1H1g25105 | 1:38,136,323-38,136,607 | - | C2H1g11687 | CX1g003190 | - | - | - | Detail |
| C1H1g11140 | 1:38,137,508-38,138,664 | - | C2H1g23261 | CX1g005588 | LOC_Os01g74370 | Os01g0975000 | - | Detail |
| C1H1g20453 | 1:38,142,873-38,143,890 | + | C2H1g00046 | CX1g004945 | LOC_Os01g74410 | Os01g0975300 | - | Detail |
| C1H1g20910 | 1:38,153,106-38,154,141 | + | - | - | - | - | - | Detail |
| C1H1g08219 | 1:38,157,516-38,158,145 | + | C2H1g01068 | CX1g003699 | LOC_Os01g74440 | Os01g0975800 | MADS79 | Detail |
| C1H1g02174 | 1:38,161,270-38,162,104 | - | C2H1g19458 | CX1g006077 | LOC_Os01g74450 | Os01g0975900 | - | Detail |
| C1H1g10248 | 1:38,165,217-38,170,708 | - | C2H1g03008 | CX1g006488 | LOC_Os01g74460 | Os01g0976000 | MON1 | Detail |
| C1H1g23123 | 1:38,171,490-38,179,527 | - | C2H1g29806 | CX1g006587 | LOC_Os01g74470 | Os01g0976100 | - | Detail |
| C1H1g19138 | 1:38,181,108-38,182,238 | - | C2H1g14975 | CX1g000916 | LOC_Os01g74480 | Os01g0976200 | - | Detail |
| C1H1g04013 | 1:38,186,232-38,186,858 | + | C2H1g05558 | CX1g003039 | LOC_Os01g74490 | Os01g0976300 | - | Detail |
| C1H1g31465 | 1:38,188,032-38,192,631 | + | C2H1g15344 | CX1g004080 | LOC_Os01g74500 | Os01g0976450 | - | Detail |
| C1H1g00111 | 1:38,193,283-38,196,868 | + | C2H1g17772 | CX1g003446 | LOC_Os01g74510 | Os01g0976500 | - | Detail |
| C1H1g31006 | 1:38,198,798-38,201,965 | - | C2H1g05896 | CX1g003902 | LOC_Os01g74520 | Os01g0976600 | - | Detail |
| C1H1g13528 | 1:38,204,043-38,207,368 | - | C2H1g11672 | CX1g001345 | LOC_Os01g74530 | Os01g0976700 | - | Detail |
| C1H1g28719 | 1:38,209,476-38,209,986 | - | C2H1g08596 | CX1g005337 | LOC_Os01g74540 | Os01g0976800 | GATA10 | Detail |
| C1H1g02636 | 1:38,212,307-38,216,056 | - | C2H1g27561 | CX1g006826 | LOC_Os01g74550 | Os01g0976900 | - | Detail |
| C1H1g11576 | 1:38,218,231-38,219,115 | + | C2H1g13292 | CX1g000198 | LOC_Os01g74570 | Os01g0977100 | OsTET1 | Detail |
| C1H1g05726 | 1:38,221,483-38,225,848 | + | C2H1g13292 | CX1g000198 | LOC_Os01g74580 | Os01g0977200 | - | Detail |
| C1H1g30613 | 1:38,226,471-38,227,208 | - | C2H1g02664 | CX1g001561 | LOC_Os01g74590 | Os01g0977300 | Os2R_MYB20 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g03508 | 5:7,583,049-7,583,942 | - | C1H5g21179 | CX5g038349 | LOC_Os05g15770 | Os05g0247100 | DIP3, XIP, OsHI-XIP | Detail |
| C2H5g09723 | 5:7,630,074-7,639,532 | - | C1H5g04227 | CX5g040966 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| C2H5g16380 | 5:7,655,551-7,657,410 | - | C1H5g29560 | CX5g038055 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| C2H5g23841 | 5:7,670,803-7,671,060 | - | C1H5g10784 | CX5g038858 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| C2H5g02175 | 5:7,695,276-7,697,536 | - | C1H5g29560 | CX5g039101 | LOC_Os05g16100 | Os05g0249800 | - | Detail |
| C2H5g15350 | 5:7,707,412-7,710,911 | - | C1H5g23916 | CX5g039101 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| C2H5g06835 | 5:7,715,435-7,719,297 | - | C1H5g17383 | CX5g039101 | LOC_Os05g16240 | Os05g0250200 | - | Detail |
| C2H5g11862 | 5:7,723,279-7,726,185 | - | C1H5g19855 | CX5g041055 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g27100 | 5:7,736,709-7,737,431 | - | - | - | - | - | - | Detail |
| C2H5g08541 | 5:7,756,996-7,758,426 | - | - | CX5g041082 | - | - | - | Detail |
| C2H5g10190 | 5:7,761,947-7,765,438 | - | C1H5g18798 | CX5g038245 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g00039 | 5:7,788,239-7,791,656 | - | C1H5g13669 | - | - | - | - | Detail |
| C2H5g10863 | 5:7,791,689-7,792,726 | - | C1H5g13669 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C2H5g12394 | 5:7,796,358-7,797,614 | - | C1H5g11478 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C2H5g03213 | 5:7,799,407-7,803,760 | + | C1H5g13415 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C2H5g18069 | 5:7,804,814-7,808,658 | + | C1H5g25482 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C2H5g11253 | 5:7,812,460-7,816,343 | + | C1H5g22880 | CX5g037603 | - | - | - | Detail |
| C2H5g17103 | 5:7,813,545-7,819,371 | - | C1H5g03577 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C2H5g24772 | 5:7,822,367-7,827,353 | - | C1H5g13508 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C2H5g01822 | 5:7,838,754-7,840,413 | - | C1H5g26814 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |