| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g24474 | 1:2,855,549-2,861,023 | - | C2H1g08155 | CX1g006690 | LOC_Os01g07110 | Os01g0164800 | OsBRCA2 | Detail |
| C1H1g28973 | 1:2,861,627-2,865,314 | - | C2H1g24105 | CX1g006690 | LOC_Os01g07110 | Os01g0164800 | OsBRCA2 | Detail |
| C1H1g28709 | 1:2,866,693-2,868,772 | + | C2H1g23761 | CX1g005149 | LOC_Os01g07120 | Os01g0165000 | - | Detail |
| C1H1g06420 | 1:2,869,020-2,870,975 | - | C2H1g13562 | CX1g003505 | LOC_Os01g07130 | Os01g0165100 | - | Detail |
| C1H1g09488 | 1:2,872,413-2,877,974 | - | C2H1g23637 | CX1g005200 | LOC_Os01g07140 | Os01g0165200 | - | Detail |
| C1H1g11655 | 1:2,915,334-2,918,475 | + | C2H1g08507 | CX1g007089 | LOC_Os01g07200 | Os01g0166100 | - | Detail |
| C1H1g25978 | 1:2,919,050-2,921,284 | + | C2H1g01020 | CX1g002009 | LOC_Os01g07212 | Os01g0166300 | - | Detail |
| C1H1g13936 | 1:2,923,443-2,925,123 | + | C2H1g10111 | - | LOC_Os01g07212 | Os01g0166400 | - | Detail |
| C1H1g07427 | 1:2,940,377-2,942,061 | + | C2H1g02905 | CX1g000127 | LOC_Os01g07250 | Os01g0166700 | - | Detail |
| C1H1g26302 | 1:2,942,833-2,946,371 | - | C2H1g25257 | CX1g005999 | LOC_Os01g07260 | Os01g0166800 | - | Detail |
| C1H1g20393 | 1:2,946,811-2,947,032 | + | C2H1g06988 | CX1g001312 | - | Os01g0167100 | - | Detail |
| C1H1g04419 | 1:2,967,967-2,970,079 | + | C2H1g17311 | CX1g006992 | LOC_Os01g06740 | Os01g0167400 | - | Detail |
| C1H1g22310 | 1:2,970,741-2,973,987 | - | C2H1g15989 | CX1g004676 | LOC_Os01g07310 | Os01g0167500 | - | Detail |
| C1H1g19378 | 1:2,978,815-2,979,883 | + | C2H1g11597 | CX1g004086 | LOC_Os01g07320 | Os01g0167600 | - | Detail |
| C1H1g21201 | 1:2,981,177-2,991,422 | - | C2H1g08925 | CX1g005536 | LOC_Os01g07340 | Os01g0167750 | - | Detail |
| C1H1g22514 | 1:2,993,362-2,995,606 | - | C2H1g08657 | CX1g001588 | LOC_Os01g07350 | Os01g0167800 | - | Detail |
| C1H1g16535 | 1:2,997,247-3,000,528 | - | C2H1g00388 | CX1g004828 | LOC_Os01g07360 | Os01g0167900 | - | Detail |
| C1H1g01854 | 1:3,002,950-3,008,871 | - | C2H1g24620 | CX1g001191 | LOC_Os01g07370 | Os01g0168100 | - | Detail |
| C1H1g14782 | 1:3,014,065-3,015,933 | - | C2H1g00503 | CX1g003480 | LOC_Os01g07376 | Os01g0168200 | - | Detail |
| C1H1g01998 | 1:3,017,575-3,020,622 | - | C2H1g03327 | CX1g005935 | LOC_Os01g07382 | Os01g0168300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g26883 | 3:30,547,135-30,556,048 | - | C1H3g06142 | CX3g030682 | LOC_Os03g58600 | Os03g0800200 | MEL1, mel1, OsMEL1, MEAL1, OsMEAL1 | Detail |
| C2H3g21138 | 3:30,562,282-30,563,610 | - | C1H3g31832 | CX3g025373 | LOC_Os03g58610 | Os03g0800400 | - | Detail |
| C2H3g28024 | 3:30,564,726-30,567,455 | - | C1H3g31832 | CX3g025373 | LOC_Os03g58620 | Os03g0800500 | - | Detail |
| C2H3g18555 | 3:30,568,209-30,570,049 | - | C1H3g31423 | CX3g026714 | LOC_Os03g58630 | Os03g0800700 | - | Detail |
| C2H3g28838 | 3:30,570,586-30,579,205 | - | C1H3g10764 | CX3g026264 | LOC_Os03g58640 | Os03g0800800 | - | Detail |
| C2H3g01155 | 3:30,580,828-30,581,365 | + | C1H3g02255 | - | - | Os03g0800900 | - | Detail |
| C2H3g25793 | 3:30,581,538-30,582,987 | + | C1H3g00648 | CX3g026772 | LOC_Os03g58690 | Os03g0801500 | - | Detail |
| C2H3g23292 | 3:30,584,427-30,584,737 | - | - | CX3g029458 | - | - | - | Detail |
| C2H3g03346 | 3:30,584,935-30,593,066 | + | C1H3g06085 | CX3g030423 | LOC_Os03g58700 | Os03g0801600 | - | Detail |
| C2H3g21897 | 3:30,593,373-30,596,684 | - | C1H3g07389 | CX3g026599 | LOC_Os03g58710 | Os03g0801700 | - | Detail |
| C2H3g02470 | 3:30,597,752-30,604,986 | + | C1H3g31741 | CX3g026853 | LOC_Os03g58720 | Os03g0801800 | - | Detail |
| C2H3g24055 | 3:30,607,479-30,608,920 | + | C1H3g13444 | CX3g028194 | LOC_Os03g58740 | Os03g0801900 | - | Detail |
| C2H3g06737 | 3:30,628,338-30,628,673 | + | C1H3g24645 | CX3g027259 | LOC_Os03g58764 | - | - | Detail |
| C2H3g22987 | 3:30,630,696-30,637,023 | - | C1H3g27952 | CX3g026467 | LOC_Os03g58780 | Os03g0802300 | - | Detail |
| C2H3g07093 | 3:30,645,433-30,647,570 | + | C1H3g23323 | CX3g029310 | LOC_Os03g58800 | Os03g0802600 | - | Detail |
| C2H3g04258 | 3:30,647,332-30,651,291 | - | C1H3g23165 | CX3g031125 | LOC_Os03g58810 | Os03g0802700 | - | Detail |
| C2H3g14685 | 3:30,651,840-30,658,004 | - | C1H3g24318 | CX3g026858 | LOC_Os03g58820 | Os03g0802800 | - | Detail |
| C2H3g17538 | 3:30,658,053-30,658,757 | - | - | - | - | - | - | Detail |
| C2H3g03398 | 3:30,658,875-30,662,606 | - | C1H3g09968 | CX3g029318 | LOC_Os03g58830 | Os03g0802900 | - | Detail |
| C2H3g17483 | 3:30,664,745-30,667,942 | + | C1H3g24192 | CX3g027749 | LOC_Os03g58840 | Os03g0803000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |