| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g08742 | 1:37,878,810-37,879,475 | + | C2H1g00754 | CX1g003828 | LOC_Os01g73770 | Os01g0968800 | OsDREB1F | Detail |
| C1H1g28424 | 1:37,889,332-37,890,883 | - | C2H1g09238 | CX1g003644 | LOC_Os01g73780 | Os01g0969000 | - | Detail |
| C1H1g31794 | 1:37,891,446-37,894,977 | - | C2H1g20740 | CX1g006205 | LOC_Os01g73790 | Os01g0969100 | - | Detail |
| C1H1g01507 | 1:37,906,288-37,909,549 | + | C2H1g09544 | CX1g003584 | LOC_Os01g73880 | Os01g0970400 | - | Detail |
| C1H1g08350 | 1:37,911,627-37,912,946 | + | C2H1g13571 | CX1g002862 | LOC_Os01g73890 | Os01g0970500 | OsTFIIAgamma1, OsTFIIAγ1 | Detail |
| C1H1g18423 | 1:37,913,620-37,917,041 | - | C2H1g20677 | CX1g006271 | LOC_Os01g73900 | Os01g0970600 | OsRH58 | Detail |
| C1H1g08408 | 1:37,918,204-37,920,437 | - | C2H1g02029 | CX1g001477 | LOC_Os01g73910 | Os01g0970700 | - | Detail |
| C1H1g27707 | 1:37,921,319-37,926,355 | - | C2H1g20906 | CX1g000299 | LOC_Os01g73950 | Os01g0970900 | - | Detail |
| C1H1g29874 | 1:37,922,784-37,923,023 | + | - | CX1g001068 | LOC_Os01g73940 | Os01g0971000 | - | Detail |
| C1H1g24776 | 1:37,929,699-37,931,836 | + | C2H1g18524 | CX1g003601 | LOC_Os01g73960 | Os01g0971100 | OsDi19-5 | Detail |
| C1H1g21855 | 1:37,933,279-37,937,712 | - | C2H1g12108 | CX1g003985 | LOC_Os01g73970 | Os01g0971200 | - | Detail |
| C1H1g24112 | 1:37,940,102-37,941,882 | + | C2H1g29254 | CX1g001229 | LOC_Os01g73980 | Os01g0971400 | - | Detail |
| C1H1g16044 | 1:37,943,109-37,944,391 | + | C2H1g07849 | CX1g006897 | LOC_Os01g73990 | Os01g0971500 | - | Detail |
| C1H1g29294 | 1:37,947,500-37,948,726 | - | C2H1g06455 | CX1g006969 | LOC_Os01g74000 | Os01g0971600 | - | Detail |
| C1H1g07344 | 1:37,948,790-37,950,687 | - | C2H1g06455 | CX1g006969 | LOC_Os01g74000 | Os01g0971600 | - | Detail |
| C1H1g11998 | 1:37,951,933-37,957,466 | - | C2H1g14357 | CX1g003751 | LOC_Os01g74010 | Os01g0971700 | - | Detail |
| C1H1g09458 | 1:37,958,268-37,958,999 | - | C2H1g05837 | CX1g002155 | LOC_Os01g74020 | Os01g0971800 | OsPCL1, OsLUX | Detail |
| C1H1g15323 | 1:37,960,317-37,966,793 | - | C2H1g13899 | CX1g001256 | LOC_Os01g74030 | Os01g0971900 | - | Detail |
| C1H1g17657 | 1:37,967,965-37,971,177 | + | C2H1g06104 | CX1g000341 | LOC_Os01g74040 | Os01g0972000 | - | Detail |
| C1H1g23136 | 1:37,972,684-37,974,615 | - | C2H1g26306 | CX1g006301 | LOC_Os01g74110 | Os01g0972200 | OsZIP1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g08492 | 9:11,011,555-11,012,362 | + | C1H9g24346 | CX9g056066 | - | - | - | Detail |
| C2H9g12793 | 9:11,012,860-11,015,222 | - | C1H9g24171 | CX9g054892 | LOC_Os09g21180 | Os09g0379600 | - | Detail |
| C2H9g20926 | 9:11,015,398-11,015,601 | + | - | CX9g057676 | - | - | - | Detail |
| C2H9g24966 | 9:11,031,110-11,033,332 | - | C1H9g09756 | CX9g056903 | LOC_Os09g21210 | Os09g0379900 | - | Detail |
| C2H9g07796 | 9:11,047,949-11,052,234 | + | C1H9g03748 | CX9g055882 | LOC_Os09g21230 | Os09g0380050 | - | Detail |
| C2H9g21407 | 9:11,057,959-11,061,264 | + | C1H9g24623 | CX9g055229 | LOC_Os09g21250 | Os09g0380200 | OsV<sub>5A</sub>, YLC1 | Detail |
| C2H9g10924 | 9:11,065,865-11,066,770 | + | - | CX9g055443 | - | Os09g0380400 | - | Detail |
| C2H9g29815 | 9:11,121,742-11,122,117 | - | - | - | - | - | - | Detail |
| C2H9g07225 | 9:11,144,145-11,148,573 | + | C1H9g04772 | CX9g055269 | LOC_Os09g21340 | Os09g0381100 | - | Detail |
| C2H9g24898 | 9:11,163,674-11,164,479 | + | C1H9g28518 | CX9g055525 | LOC_Os09g21380 | Os09g0381600 | - | Detail |
| C2H9g18647 | 9:11,173,284-11,180,309 | - | C1H9g19657 | CX9g056093 | LOC_Os09g21430 | Os09g0382120 | - | Detail |
| C2H9g06489 | 9:11,187,738-11,191,288 | - | C1H9g14369 | CX9g055130 | LOC_Os09g21450 | Os09g0382300 | - | Detail |
| C2H9g10297 | 9:11,194,610-11,196,401 | - | C1H9g10046 | CX9g058028 | LOC_Os09g21460 | Os09g0382400 | - | Detail |
| C2H9g07495 | 9:11,202,092-11,204,445 | - | C1H9g21689 | CX9g056330 | LOC_Os09g21470 | Os09g0382500 | - | Detail |
| C2H9g06304 | 9:11,215,871-11,216,947 | + | C1H9g23009 | CX9g055290 | LOC_Os09g21490 | - | - | Detail |
| C2H9g14634 | 9:11,233,854-11,239,362 | + | C1H9g07650 | CX9g055150 | LOC_Os09g21510 | Os09g0383300 | - | Detail |
| C2H9g24570 | 9:11,242,954-11,247,140 | + | C1H9g10004 | CX9g056451 | LOC_Os09g21520 | Os09g0383400 | - | Detail |
| C2H9g25223 | 9:11,351,400-11,351,925 | - | - | CX9g057054 | LOC_Os09g21689 | Os09g0385300 | - | Detail |
| C2H9g24035 | 9:11,366,004-11,368,008 | + | C1H9g25406 | - | - | - | - | Detail |
| C2H9g26646 | 9:11,377,865-11,381,595 | - | C1H9g20064 | CX9g057745 | LOC_Os09g21760 | Os09g0386400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |