| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g16335 | 1:36,969,708-36,972,923 | + | C2H1g26876 | CX1g003320 | LOC_Os01g71380 | Os01g0946700 | OsGLN1 | Detail |
| C1H1g28153 | 1:36,975,055-36,982,346 | + | C2H1g25982 | CX1g005350 | LOC_Os01g71960 | Os01g0948100 | OsMus81, OsMus81beta, OsMus81β | Detail |
| C1H1g11535 | 1:36,995,688-36,997,016 | + | C2H1g13478 | CX1g002069 | LOC_Os01g71970 | Os01g0948200 | OsDLA | Detail |
| C1H1g04988 | 1:36,999,122-37,001,615 | + | C2H1g24573 | CX1g003090 | LOC_Os01g71980 | Os01g0948300 | - | Detail |
| C1H1g12107 | 1:37,001,585-37,004,649 | - | C2H1g07613 | CX1g004443 | LOC_Os01g71990 | Os01g0948400 | OsP5CR | Detail |
| C1H1g04245 | 1:37,005,232-37,009,159 | - | C2H1g30437 | CX1g001292 | LOC_Os01g72000 | Os01g0948500 | - | Detail |
| C1H1g24544 | 1:37,024,281-37,027,744 | - | C2H1g07385 | CX1g006785 | LOC_Os01g72020 | Os01g0948900 | OsBOP1, NH4 | Detail |
| C1H1g23618 | 1:37,063,151-37,067,802 | - | C2H1g13462 | CX1g002411 | LOC_Os01g72049 | Os01g0949060 | - | Detail |
| C1H1g17659 | 1:37,075,795-37,076,391 | + | C2H1g16329 | CX1g003732 | LOC_Os01g72080 | Os01g0949300 | - | Detail |
| C1H1g24211 | 1:37,079,793-37,082,622 | - | C2H1g17329 | CX1g003977 | LOC_Os01g72090 | Os01g0949400 | - | Detail |
| C1H1g05070 | 1:37,083,927-37,084,484 | - | C2H1g08758 | CX1g004333 | LOC_Os01g72100 | Os01g0949500 | - | Detail |
| C1H1g07252 | 1:37,094,149-37,095,200 | + | C2H1g28530 | CX1g001038 | LOC_Os01g72120 | Os01g0949700 | - | Detail |
| C1H1g22384 | 1:37,095,717-37,096,507 | + | C2H1g18539 | CX1g001038 | LOC_Os01g72130 | Os01g0949750 | - | Detail |
| C1H1g30242 | 1:37,098,253-37,099,383 | + | C2H1g25830 | CX1g001038 | LOC_Os01g72140 | Os01g0949800 | - | Detail |
| C1H1g00771 | 1:37,100,645-37,101,455 | + | C2H1g25821 | CX1g001038 | LOC_Os01g72150 | Os01g0949800 | - | Detail |
| C1H1g09413 | 1:37,101,931-37,102,733 | + | C2H1g04599 | CX1g001038 | LOC_Os01g72160 | Os01g0950000 | - | Detail |
| C1H1g16006 | 1:37,105,115-37,105,828 | + | C2H1g22758 | CX1g001038 | LOC_Os01g72170 | Os01g0950000 | - | Detail |
| C1H1g15694 | 1:37,110,283-37,111,721 | + | C2H1g19803 | CX1g001087 | LOC_Os01g72190 | - | - | Detail |
| C1H1g31521 | 1:37,113,544-37,114,611 | - | - | CX1g004052 | LOC_Os01g72200 | Os01g0950800 | - | Detail |
| C1H1g27599 | 1:37,115,935-37,117,015 | - | C2H1g09890 | CX1g000649 | LOC_Os01g72205 | Os01g0950866 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g02682 | 4:24,981,902-24,985,404 | + | C1H4g00939 | CX4g032798 | LOC_Os04g48770 | Os04g0577000 | - | Detail |
| C2H4g06759 | 4:24,996,850-24,998,470 | + | C1H4g29789 | CX4g034166 | LOC_Os04g48790 | Os04g0577200 | - | Detail |
| C2H4g02885 | 4:24,999,204-25,000,706 | + | C1H4g21419 | CX4g031549 | LOC_Os04g48800 | Os04g0577300 | - | Detail |
| C2H4g04359 | 4:25,001,260-25,001,592 | + | - | CX4g032326 | - | Os04g0577375 | - | Detail |
| C2H4g14499 | 4:25,003,525-25,007,783 | - | C1H4g20329 | CX4g035442 | LOC_Os04g48820 | Os04g0577500 | - | Detail |
| C2H4g16860 | 4:25,009,766-25,010,881 | + | C1H4g03454 | CX4g034935 | LOC_Os04g48830 | Os04g0577700 | - | Detail |
| C2H4g10805 | 4:25,012,809-25,013,349 | - | C1H4g22772 | - | LOC_Os04g48840 | Os04g0577800 | - | Detail |
| C2H4g05203 | 4:25,014,636-25,016,112 | - | C1H4g00141 | CX4g036558 | LOC_Os04g48840 | Os04g0577800 | - | Detail |
| C2H4g06518 | 4:25,023,756-25,025,902 | - | C1H4g25724 | CX4g036415 | LOC_Os04g48850 | Os04g0578000 | ACS2, OsACS2, Os-ACS2 | Detail |
| C2H4g19030 | 4:25,040,729-25,041,922 | + | C1H4g24454 | CX4g032177 | - | Os04g0578200 | - | Detail |
| C2H4g16720 | 4:25,045,858-25,046,362 | + | C1H4g23154 | CX4g035222 | LOC_Os04g48870 | Os04g0578300 | - | Detail |
| C2H4g19270 | 4:25,050,449-25,052,505 | + | C1H4g05799 | CX4g033101 | LOC_Os04g48880 | Os04g0578400 | - | Detail |
| C2H4g07940 | 4:25,055,795-25,057,258 | + | C1H4g10126 | CX4g036080 | - | Os04g0578550 | - | Detail |
| C2H4g30133 | 4:25,059,958-25,062,768 | - | C1H4g19909 | CX4g031675 | LOC_Os04g48930 | Os04g0578600 | OsFRO2, OsFRO1 | Detail |
| C2H4g19460 | 4:25,065,530-25,072,027 | + | C1H4g18610 | CX4g031656 | LOC_Os04g48940 | Os04g0578700 | - | Detail |
| C2H4g08137 | 4:25,073,204-25,075,579 | - | C1H4g06167 | CX4g031706 | LOC_Os04g48950 | Os04g0578800 | - | Detail |
| C2H4g15292 | 4:25,086,944-25,087,585 | - | C1H4g23703 | CX4g034007 | LOC_Os04g49000 | Os04g0579200 | - | Detail |
| C2H4g00337 | 4:25,109,571-25,114,540 | + | C1H4g29255 | CX4g036342 | LOC_Os04g52050 | Os04g0610000 | - | Detail |
| C2H4g23542 | 4:25,117,408-25,119,619 | + | C1H4g02070 | CX4g031363 | LOC_Os04g49060 | Os04g0579700 | - | Detail |
| C2H4g12488 | 4:25,129,785-25,131,653 | - | C1H4g18122 | CX4g036470 | LOC_Os04g49110 | Os04g0580300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |