| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g16335 | 1:36,969,708-36,972,923 | + | C2H1g26876 | CX1g003320 | LOC_Os01g71380 | Os01g0946700 | OsGLN1 | Detail |
| C1H1g28153 | 1:36,975,055-36,982,346 | + | C2H1g25982 | CX1g005350 | LOC_Os01g71960 | Os01g0948100 | OsMus81, OsMus81beta, OsMus81β | Detail |
| C1H1g11535 | 1:36,995,688-36,997,016 | + | C2H1g13478 | CX1g002069 | LOC_Os01g71970 | Os01g0948200 | OsDLA | Detail |
| C1H1g04988 | 1:36,999,122-37,001,615 | + | C2H1g24573 | CX1g003090 | LOC_Os01g71980 | Os01g0948300 | - | Detail |
| C1H1g12107 | 1:37,001,585-37,004,649 | - | C2H1g07613 | CX1g004443 | LOC_Os01g71990 | Os01g0948400 | OsP5CR | Detail |
| C1H1g04245 | 1:37,005,232-37,009,159 | - | C2H1g30437 | CX1g001292 | LOC_Os01g72000 | Os01g0948500 | - | Detail |
| C1H1g24544 | 1:37,024,281-37,027,744 | - | C2H1g07385 | CX1g006785 | LOC_Os01g72020 | Os01g0948900 | OsBOP1, NH4 | Detail |
| C1H1g23618 | 1:37,063,151-37,067,802 | - | C2H1g13462 | CX1g002411 | LOC_Os01g72049 | Os01g0949060 | - | Detail |
| C1H1g17659 | 1:37,075,795-37,076,391 | + | C2H1g16329 | CX1g003732 | LOC_Os01g72080 | Os01g0949300 | - | Detail |
| C1H1g24211 | 1:37,079,793-37,082,622 | - | C2H1g17329 | CX1g003977 | LOC_Os01g72090 | Os01g0949400 | - | Detail |
| C1H1g05070 | 1:37,083,927-37,084,484 | - | C2H1g08758 | CX1g004333 | LOC_Os01g72100 | Os01g0949500 | - | Detail |
| C1H1g07252 | 1:37,094,149-37,095,200 | + | C2H1g28530 | CX1g001038 | LOC_Os01g72120 | Os01g0949700 | - | Detail |
| C1H1g22384 | 1:37,095,717-37,096,507 | + | C2H1g18539 | CX1g001038 | LOC_Os01g72130 | Os01g0949750 | - | Detail |
| C1H1g30242 | 1:37,098,253-37,099,383 | + | C2H1g25830 | CX1g001038 | LOC_Os01g72140 | Os01g0949800 | - | Detail |
| C1H1g00771 | 1:37,100,645-37,101,455 | + | C2H1g25821 | CX1g001038 | LOC_Os01g72150 | Os01g0949800 | - | Detail |
| C1H1g09413 | 1:37,101,931-37,102,733 | + | C2H1g04599 | CX1g001038 | LOC_Os01g72160 | Os01g0950000 | - | Detail |
| C1H1g16006 | 1:37,105,115-37,105,828 | + | C2H1g22758 | CX1g001038 | LOC_Os01g72170 | Os01g0950000 | - | Detail |
| C1H1g15694 | 1:37,110,283-37,111,721 | + | C2H1g19803 | CX1g001087 | LOC_Os01g72190 | - | - | Detail |
| C1H1g31521 | 1:37,113,544-37,114,611 | - | - | CX1g004052 | LOC_Os01g72200 | Os01g0950800 | - | Detail |
| C1H1g27599 | 1:37,115,935-37,117,015 | - | C2H1g09890 | CX1g000649 | LOC_Os01g72205 | Os01g0950866 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g22211 | 3:7,055,828-7,058,969 | - | C1H3g08518 | CX3g027601 | LOC_Os03g14700 | Os03g0251600 | OsC2DP29 | Detail |
| C2H3g23862 | 3:7,062,815-7,066,933 | + | C1H3g13884 | CX3g025283 | LOC_Os03g14710 | Os03g0251700 | - | Detail |
| C2H3g08409 | 3:7,067,858-7,071,435 | - | C1H3g19434 | CX3g029065 | LOC_Os03g14720 | - | - | Detail |
| C2H3g07197 | 3:7,072,121-7,072,672 | - | C1H3g22396 | CX3g030425 | - | - | - | Detail |
| C2H3g07863 | 3:7,076,919-7,077,896 | - | C1H3g11496 | CX3g028408 | LOC_Os03g14730 | Os03g0252100 | DIP12, OsDIP12 | Detail |
| C2H3g26743 | 3:7,094,528-7,095,132 | - | C1H3g17355 | CX3g030146 | - | Os03g0672900 | OsXYN1, OsXyn1 | Detail |
| C2H3g25791 | 3:7,095,211-7,095,489 | - | - | - | - | - | - | Detail |
| C2H3g09632 | 3:7,097,084-7,097,810 | + | C1H3g20834 | CX3g025353 | LOC_Os03g14790 | - | - | Detail |
| C2H3g26671 | 3:7,098,308-7,101,922 | + | C1H3g27328 | CX3g025353 | LOC_Os03g14790 | Os03g0682200 | - | Detail |
| C2H3g27873 | 3:7,103,867-7,109,162 | - | C1H3g10342 | CX3g029321 | LOC_Os03g14800 | Os03g0252800 | - | Detail |
| C2H3g05415 | 3:7,113,624-7,114,199 | - | C1H3g03427 | CX3g026810 | LOC_Os03g14810 | Os03g0252900 | - | Detail |
| C2H3g20389 | 3:7,120,225-7,125,934 | - | C1H3g13989 | CX3g025241 | - | Os03g0253100 | - | Detail |
| C2H3g29944 | 3:7,134,478-7,136,007 | + | C1H3g21796 | CX3g029104 | LOC_Os03g14840 | Os03g0253200 | - | Detail |
| C2H3g07742 | 3:7,149,123-7,150,428 | - | C1H3g30447 | CX3g029003 | LOC_Os03g14860 | Os03g0253500 | - | Detail |
| C2H3g06446 | 3:7,157,043-7,158,059 | - | C1H3g10348 | CX3g028867 | LOC_Os03g14880 | Os03g0253600 | - | Detail |
| C2H3g06821 | 3:7,163,212-7,168,316 | - | C1H3g02049 | - | LOC_Os03g14890 | Os03g0253800 | - | Detail |
| C2H3g12053 | 3:7,170,891-7,174,720 | - | C1H3g17610 | CX3g029243 | LOC_Os03g14900 | Os03g0254000 | - | Detail |
| C2H3g13183 | 3:7,177,515-7,178,305 | + | - | - | - | - | - | Detail |
| C2H3g19284 | 3:7,181,393-7,185,027 | + | C1H3g15353 | CX3g028413 | LOC_Os03g14910 | Os03g0254200 | - | Detail |
| C2H3g17074 | 3:7,185,689-7,186,792 | + | C1H3g13729 | CX3g025235 | LOC_Os03g14915 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |