| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g22893 | 1:2,653,954-2,655,143 | + | C2H1g08769 | CX1g001891 | LOC_Os01g06640 | Os01g0159800 | OsbHLH035 | Detail |
| C1H1g13369 | 1:2,657,077-2,660,475 | - | C2H1g08402 | CX1g004847 | LOC_Os01g06660 | Os01g0160100 | - | Detail |
| C1H1g02072 | 1:2,667,651-2,670,704 | + | C2H1g02115 | CX1g004872 | LOC_Os01g06730 | Os01g0160700 | - | Detail |
| C1H1g25834 | 1:2,679,082-2,680,838 | + | C2H1g02115 | CX1g004872 | LOC_Os01g06730 | Os01g0160700 | - | Detail |
| C1H1g25336 | 1:2,684,841-2,687,885 | + | C2H1g17754 | CX1g004872 | LOC_Os01g06730 | Os01g0160700 | - | Detail |
| C1H1g28353 | 1:2,690,494-2,698,799 | + | C2H1g27758 | CX1g002328 | LOC_Os01g06790 | Os01g0161300 | - | Detail |
| C1H1g24738 | 1:2,708,826-2,711,079 | + | C2H1g24385 | CX1g002328 | LOC_Os01g06820 | Os01g0162200 | - | Detail |
| C1H1g01281 | 1:2,712,564-2,715,479 | + | C2H1g16557 | CX1g002328 | LOC_Os01g06876 | Os01g0162300 | - | Detail |
| C1H1g09383 | 1:2,721,107-2,724,534 | - | C2H1g13733 | CX1g003198 | LOC_Os01g14200 | - | - | Detail |
| C1H1g00402 | 1:2,736,152-2,738,906 | + | C2H1g16427 | CX1g004872 | LOC_Os01g06870 | Os01g0162200 | - | Detail |
| C1H1g06036 | 1:2,742,644-2,743,775 | + | C2H1g16427 | CX1g004872 | LOC_Os01g06870 | Os01g0162200 | - | Detail |
| C1H1g23629 | 1:2,747,471-2,747,722 | + | - | - | - | - | - | Detail |
| C1H1g04251 | 1:2,748,602-2,752,441 | + | C2H1g07682 | CX1g004872 | LOC_Os01g06890 | Os01g0162500 | - | Detail |
| C1H1g22094 | 1:2,756,339-2,759,338 | + | C2H1g14358 | CX1g004872 | LOC_Os01g06920 | Os01g0163000 | - | Detail |
| C1H1g31587 | 1:2,779,940-2,786,135 | + | C2H1g23554 | CX1g002328 | LOC_Os01g06900 | Os01g0162800 | - | Detail |
| C1H1g08662 | 1:2,817,813-2,818,370 | - | C2H1g03264 | - | LOC_Os01g07030 | Os01g0164075 | - | Detail |
| C1H1g24044 | 1:2,831,998-2,836,264 | + | C2H1g01310 | CX1g001881 | LOC_Os01g07070 | Os01g0164400 | - | Detail |
| C1H1g01954 | 1:2,837,850-2,841,233 | - | C2H1g17499 | CX1g000968 | LOC_Os01g07080 | Os01g0164500 | - | Detail |
| C1H1g15703 | 1:2,841,557-2,844,469 | - | C2H1g10134 | CX1g003856 | LOC_Os01g07090 | Os01g0164600 | - | Detail |
| C1H1g09727 | 1:2,844,592-2,851,627 | + | C2H1g02724 | CX1g006755 | LOC_Os01g07100 | Os01g0164700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g07424 | 9:19,218,434-19,222,530 | + | C1H9g13374 | CX9g057785 | LOC_Os09g39220 | Os09g0565600 | - | Detail |
| C2H9g05946 | 9:19,224,305-19,225,510 | + | C1H9g26902 | CX9g055093 | LOC_Os09g39230 | Os09g0565700 | - | Detail |
| C2H9g19055 | 9:19,229,128-19,230,339 | + | C1H9g23958 | CX9g057620 | LOC_Os09g39260 | Os09g0566050 | - | Detail |
| C2H9g15395 | 9:19,231,647-19,237,669 | - | C1H9g25655 | CX9g056260 | LOC_Os09g39270 | Os09g0566100 | - | Detail |
| C2H9g06176 | 9:19,245,063-19,247,290 | - | C1H9g18076 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C2H9g22038 | 9:19,251,638-19,252,552 | - | C1H9g18076 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C2H9g09064 | 9:19,256,964-19,263,700 | - | C1H9g21987 | CX9g056096 | LOC_Os09g39320 | Os09g0566550 | - | Detail |
| C2H9g08732 | 9:19,265,273-19,266,640 | - | C1H9g31128 | CX9g056096 | LOC_Os09g39350 | Os09g0567000 | - | Detail |
| C2H9g17992 | 9:19,273,423-19,277,358 | + | C1H9g04890 | CX9g056849 | LOC_Os09g39380 | Os09g0567300 | MDHAR, OsMDHAR, OsMDAR3, OsMDHAR3 | Detail |
| C2H9g25680 | 9:19,277,859-19,280,562 | + | C1H9g13266 | CX9g058049 | LOC_Os09g39390 | Os09g0567366 | - | Detail |
| C2H9g00653 | 9:19,282,863-19,285,337 | + | C1H9g16090 | CX9g056022 | LOC_Os09g39400 | Os09g0567400 | - | Detail |
| C2H9g10548 | 9:19,289,359-19,295,560 | + | C1H9g25909 | CX9g057497 | LOC_Os09g39410 | Os09g0567500 | - | Detail |
| C2H9g15634 | 9:19,296,740-19,301,777 | + | C1H9g01897 | CX9g055257 | LOC_Os09g39420 | Os09g0567700 | - | Detail |
| C2H9g07527 | 9:19,301,792-19,305,375 | - | C1H9g27590 | CX9g058075 | LOC_Os09g39430 | Os09g0567800 | - | Detail |
| C2H9g28844 | 9:19,309,307-19,311,969 | - | C1H9g04610 | CX9g058045 | LOC_Os09g39440 | Os09g0567900 | - | Detail |
| C2H9g14034 | 9:19,314,286-19,318,425 | + | C1H9g06631 | CX9g055030 | LOC_Os09g39462 | Os09g0568000 | - | Detail |
| C2H9g07303 | 9:19,319,765-19,321,171 | + | C1H9g18800 | CX9g055723 | LOC_Os09g39474 | Os09g0568100 | - | Detail |
| C2H9g14146 | 9:19,321,995-19,323,316 | - | C1H9g25533 | CX9g055477 | LOC_Os09g39490 | Os09g0568200 | - | Detail |
| C2H9g28333 | 9:19,333,286-19,334,722 | - | C1H9g27100 | CX9g057377 | LOC_Os09g39540 | Os09g0568800 | - | Detail |
| C2H9g03364 | 9:19,334,994-19,336,916 | + | C1H9g30656 | CX9g055404 | LOC_Os09g39550 | Os09g0568900 | IF1-2, IF<sub>1</sub>-2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |