| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g22893 | 1:2,653,954-2,655,143 | + | C2H1g08769 | CX1g001891 | LOC_Os01g06640 | Os01g0159800 | OsbHLH035 | Detail |
| C1H1g13369 | 1:2,657,077-2,660,475 | - | C2H1g08402 | CX1g004847 | LOC_Os01g06660 | Os01g0160100 | - | Detail |
| C1H1g02072 | 1:2,667,651-2,670,704 | + | C2H1g02115 | CX1g004872 | LOC_Os01g06730 | Os01g0160700 | - | Detail |
| C1H1g25834 | 1:2,679,082-2,680,838 | + | C2H1g02115 | CX1g004872 | LOC_Os01g06730 | Os01g0160700 | - | Detail |
| C1H1g25336 | 1:2,684,841-2,687,885 | + | C2H1g17754 | CX1g004872 | LOC_Os01g06730 | Os01g0160700 | - | Detail |
| C1H1g28353 | 1:2,690,494-2,698,799 | + | C2H1g27758 | CX1g002328 | LOC_Os01g06790 | Os01g0161300 | - | Detail |
| C1H1g24738 | 1:2,708,826-2,711,079 | + | C2H1g24385 | CX1g002328 | LOC_Os01g06820 | Os01g0162200 | - | Detail |
| C1H1g01281 | 1:2,712,564-2,715,479 | + | C2H1g16557 | CX1g002328 | LOC_Os01g06876 | Os01g0162300 | - | Detail |
| C1H1g09383 | 1:2,721,107-2,724,534 | - | C2H1g13733 | CX1g003198 | LOC_Os01g14200 | - | - | Detail |
| C1H1g00402 | 1:2,736,152-2,738,906 | + | C2H1g16427 | CX1g004872 | LOC_Os01g06870 | Os01g0162200 | - | Detail |
| C1H1g06036 | 1:2,742,644-2,743,775 | + | C2H1g16427 | CX1g004872 | LOC_Os01g06870 | Os01g0162200 | - | Detail |
| C1H1g23629 | 1:2,747,471-2,747,722 | + | - | - | - | - | - | Detail |
| C1H1g04251 | 1:2,748,602-2,752,441 | + | C2H1g07682 | CX1g004872 | LOC_Os01g06890 | Os01g0162500 | - | Detail |
| C1H1g22094 | 1:2,756,339-2,759,338 | + | C2H1g14358 | CX1g004872 | LOC_Os01g06920 | Os01g0163000 | - | Detail |
| C1H1g31587 | 1:2,779,940-2,786,135 | + | C2H1g23554 | CX1g002328 | LOC_Os01g06900 | Os01g0162800 | - | Detail |
| C1H1g08662 | 1:2,817,813-2,818,370 | - | C2H1g03264 | - | LOC_Os01g07030 | Os01g0164075 | - | Detail |
| C1H1g24044 | 1:2,831,998-2,836,264 | + | C2H1g01310 | CX1g001881 | LOC_Os01g07070 | Os01g0164400 | - | Detail |
| C1H1g01954 | 1:2,837,850-2,841,233 | - | C2H1g17499 | CX1g000968 | LOC_Os01g07080 | Os01g0164500 | - | Detail |
| C1H1g15703 | 1:2,841,557-2,844,469 | - | C2H1g10134 | CX1g003856 | LOC_Os01g07090 | Os01g0164600 | - | Detail |
| C1H1g09727 | 1:2,844,592-2,851,627 | + | C2H1g02724 | CX1g006755 | LOC_Os01g07100 | Os01g0164700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g09001 | 6:2,272,854-2,274,176 | + | C1H6g29479 | CX6g042252 | LOC_Os06g06300 | Os06g0157500 | RFT1, FT-L 3, OsFTL3, FT-L3, RFT | Detail |
| C2H6g08710 | 6:2,283,559-2,284,174 | + | C1H6g06407 | CX6g045894 | LOC_Os06g06320 | Os06g0157700 | HD3A, Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2 | Detail |
| C2H6g23992 | 6:2,285,513-2,285,704 | + | C1H6g09433 | CX6g045894 | LOC_Os06g06320 | Os06g0157700 | HD3A, Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2 | Detail |
| C2H6g09872 | 6:2,295,836-2,296,849 | + | C1H6g29691 | CX6g041455 | LOC_Os06g06330 | Os06g0157800 | - | Detail |
| C2H6g19375 | 6:2,298,392-2,298,872 | + | C1H6g13605 | CX6g043465 | LOC_Os06g06340 | Os06g0157900 | - | Detail |
| C2H6g03223 | 6:2,300,339-2,308,133 | + | C1H6g01052 | CX6g041165 | LOC_Os06g06350 | Os06g0158000 | - | Detail |
| C2H6g20805 | 6:2,310,236-2,313,536 | + | C1H6g08202 | CX6g041162 | LOC_Os06g06360 | Os06g0158100 | OsWRKY93, OsWRKY113 | Detail |
| C2H6g18246 | 6:2,315,896-2,322,693 | + | C1H6g28677 | CX6g044558 | LOC_Os06g06370 | Os06g0158200 | - | Detail |
| C2H6g22243 | 6:2,323,220-2,329,004 | - | C1H6g07185 | CX6g044801 | LOC_Os06g06380 | Os06g0158300 | - | Detail |
| C2H6g03461 | 6:2,331,239-2,335,093 | - | C1H6g00361 | CX6g045279 | LOC_Os06g06390 | Os06g0158400 | - | Detail |
| C2H6g12842 | 6:2,336,571-2,340,132 | - | C1H6g04562 | CX6g044801 | LOC_Os06g06400 | Os06g0158500 | - | Detail |
| C2H6g18686 | 6:2,343,271-2,345,920 | - | C1H6g29953 | CX6g045460 | LOC_Os06g06410 | Os06g0158600 | - | Detail |
| C2H6g03596 | 6:2,346,287-2,348,327 | + | C1H6g03313 | - | LOC_Os06g06420 | Os06g0158700 | - | Detail |
| C2H6g00327 | 6:2,349,466-2,350,395 | + | - | CX6g044562 | LOC_Os06g06430 | Os06g0158800 | - | Detail |
| C2H6g14590 | 6:2,351,239-2,361,917 | - | C1H6g02873 | CX6g041204 | LOC_Os06g06440 | Os06g0158900 | OsMRP15, OsABCC15, OsABCC15/MRP15 | Detail |
| C2H6g19286 | 6:2,385,093-2,388,696 | + | C1H6g15545 | CX6g044205 | LOC_Os06g06450 | Os06g0159400 | - | Detail |
| C2H6g12020 | 6:2,389,673-2,390,618 | - | C1H6g00179 | CX6g042400 | LOC_Os06g06510 | Os06g0160001 | - | Detail |
| C2H6g03704 | 6:2,391,602-2,395,602 | + | C1H6g14833 | CX6g044205 | LOC_Os06g06470 | Os06g0159600 | - | Detail |
| C2H6g15557 | 6:2,395,948-2,397,192 | - | C1H6g00179 | CX6g042400 | LOC_Os06g06510 | Os06g0159725 | - | Detail |
| C2H6g13339 | 6:2,405,010-2,408,929 | + | C1H6g29654 | CX6g041545 | LOC_Os06g06490 | Os06g0159900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |