| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12726 | 1:34,938,831-34,939,619 | + | C2H1g20697 | CX1g003493 | LOC_Os01g67950 | Os01g0907200 | - | Detail |
| C1H1g26541 | 1:34,942,504-34,947,620 | + | C2H1g10610 | CX1g004144 | LOC_Os01g67960 | Os01g0907300 | - | Detail |
| C1H1g18538 | 1:34,948,320-34,955,231 | + | C2H1g19705 | CX1g000822 | LOC_Os01g67970 | Os01g0907400 | JMJ705 | Detail |
| C1H1g19874 | 1:34,956,430-34,957,545 | + | C2H1g29254 | CX1g000036 | LOC_Os01g67980 | Os01g0907600 | OsSAG12-1 | Detail |
| C1H1g08768 | 1:34,972,914-34,976,480 | + | C2H1g19503 | CX1g000912 | LOC_Os01g68000 | Os01g0907900 | PLA2, pla2, pla2(pla2-1, pla2-2), plt2, LHD2 | Detail |
| C1H1g13810 | 1:34,987,033-34,989,975 | - | C2H1g14371 | CX1g000788 | LOC_Os01g68010 | Os01g0908100 | - | Detail |
| C1H1g00934 | 1:34,993,325-34,997,431 | + | C2H1g27794 | CX1g002877 | LOC_Os01g68020 | Os01g0908200 | OsBT | Detail |
| C1H1g26380 | 1:34,998,549-34,999,821 | - | C2H1g06918 | CX1g005492 | LOC_Os01g68030 | Os01g0908400 | - | Detail |
| C1H1g26157 | 1:35,001,120-35,004,353 | - | C2H1g30537 | CX1g002681 | LOC_Os01g68040 | Os01g0908500 | - | Detail |
| C1H1g02663 | 1:35,011,447-35,013,794 | + | C2H1g27819 | CX1g003019 | LOC_Os01g68050 | Os01g0908600 | OsProT1 | Detail |
| C1H1g28238 | 1:35,014,156-35,018,530 | - | C2H1g20684 | CX1g003471 | LOC_Os01g68060 | Os01g0908700 | - | Detail |
| C1H1g12819 | 1:35,026,038-35,027,558 | + | C2H1g22636 | CX1g001370 | LOC_Os01g68070 | Os01g0908800 | - | Detail |
| C1H1g18966 | 1:35,031,109-35,032,479 | - | - | CX1g007120 | LOC_Os01g68090 | Os01g0909000 | - | Detail |
| C1H1g09218 | 1:35,033,587-35,036,812 | + | C2H1g29519 | CX1g001897 | LOC_Os01g68104 | Os01g0909100 | - | Detail |
| C1H1g22460 | 1:35,039,709-35,040,078 | - | C2H1g05938 | - | - | Os01g0909150 | - | Detail |
| C1H1g21604 | 1:35,041,397-35,051,861 | - | C2H1g23470 | CX1g001307 | LOC_Os01g68120 | Os01g0909200 | OsDCL3a | Detail |
| C1H1g09277 | 1:35,055,480-35,055,878 | + | C2H1g03983 | CX1g000844 | LOC_Os01g68130 | - | - | Detail |
| C1H1g24131 | 1:35,056,030-35,059,812 | + | C2H1g03983 | CX1g000844 | LOC_Os01g68130 | Os01g0909300 | - | Detail |
| C1H1g09913 | 1:35,060,666-35,061,631 | - | - | CX1g002611 | LOC_Os01g68140 | Os01g0909400 | - | Detail |
| C1H1g04879 | 1:35,067,984-35,071,444 | + | C2H1g20920 | CX1g003036 | LOC_Os01g68260 | Os01g0971200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g15484 | 5:7,890,974-7,891,445 | + | C1H5g13165 | CX5g039636 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C2H5g22806 | 5:7,895,671-7,896,880 | + | C1H5g15820 | CX5g039636 | LOC_Os05g16430 | Os05g0258400 | - | Detail |
| C2H5g01726 | 5:7,941,836-7,945,464 | + | C1H5g26412 | CX5g040627 | LOC_Os05g16630 | Os05g0255600 | - | Detail |
| C2H5g24880 | 5:7,948,695-7,953,664 | + | C1H5g13724 | CX5g040616 | LOC_Os05g16640 | Os05g0255800 | - | Detail |
| C2H5g00655 | 5:7,958,651-7,964,493 | + | C1H5g15674 | CX5g039252 | LOC_Os05g16660 | Os05g0256000 | - | Detail |
| C2H5g00991 | 5:7,977,231-7,988,242 | + | C1H5g11784 | CX5g038401 | LOC_Os05g16670 | Os05g0256100 | - | Detail |
| C2H5g02628 | 5:8,033,195-8,043,634 | + | C1H5g15820 | CX5g040531 | LOC_Os05g16740 | Os05g0256500 | - | Detail |
| C2H5g15704 | 5:8,067,845-8,077,489 | + | C1H5g24182 | CX5g039056 | LOC_Os05g16824 | Os05g0257100 | - | Detail |
| C2H5g05784 | 5:8,082,123-8,082,681 | + | C1H5g28432 | CX3g030223 | - | - | - | Detail |
| C2H5g10404 | 5:8,098,939-8,099,751 | + | C1H5g13165 | CX5g036934 | LOC_Os05g16920 | Os05g0258400 | - | Detail |
| C2H5g09148 | 5:8,104,215-8,111,032 | + | C1H5g16401 | CX5g040223 | LOC_Os05g16930 | Os05g0258400 | - | Detail |
| C2H5g27501 | 5:8,138,685-8,139,056 | + | - | - | - | - | - | Detail |
| C2H5g12556 | 5:8,141,799-8,148,188 | + | C1H5g26063 | CX5g036934 | LOC_Os05g16420 | Os05g0263100 | - | Detail |
| C2H5g10804 | 5:8,170,876-8,171,133 | - | - | CX5g039686 | - | - | - | Detail |
| C2H5g26769 | 5:8,171,944-8,172,648 | + | - | - | - | - | - | Detail |
| C2H5g13404 | 5:8,177,378-8,182,945 | + | C1H5g31408 | CX5g038227 | LOC_Os05g16740 | Os05g0170300 | OsSGN3b | Detail |
| C2H5g07983 | 5:8,218,477-8,220,120 | + | C1H5g04336 | CX5g036934 | LOC_Os05g16420 | Os05g0263100 | - | Detail |
| C2H5g10995 | 5:8,225,710-8,232,617 | + | C1H5g15820 | CX5g036934 | LOC_Os05g16740 | Os05g0265500 | - | Detail |
| C2H5g15153 | 5:8,231,556-8,241,392 | - | - | CX5g038474 | LOC_Os05g16340 | - | - | Detail |
| C2H5g15568 | 5:8,238,240-8,242,797 | + | C1H5g11784 | CX5g040273 | LOC_Os05g17810 | Os05g0263100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |