| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12726 | 1:34,938,831-34,939,619 | + | C2H1g20697 | CX1g003493 | LOC_Os01g67950 | Os01g0907200 | - | Detail |
| C1H1g26541 | 1:34,942,504-34,947,620 | + | C2H1g10610 | CX1g004144 | LOC_Os01g67960 | Os01g0907300 | - | Detail |
| C1H1g18538 | 1:34,948,320-34,955,231 | + | C2H1g19705 | CX1g000822 | LOC_Os01g67970 | Os01g0907400 | JMJ705 | Detail |
| C1H1g19874 | 1:34,956,430-34,957,545 | + | C2H1g29254 | CX1g000036 | LOC_Os01g67980 | Os01g0907600 | OsSAG12-1 | Detail |
| C1H1g08768 | 1:34,972,914-34,976,480 | + | C2H1g19503 | CX1g000912 | LOC_Os01g68000 | Os01g0907900 | PLA2, pla2, pla2(pla2-1, pla2-2), plt2, LHD2 | Detail |
| C1H1g13810 | 1:34,987,033-34,989,975 | - | C2H1g14371 | CX1g000788 | LOC_Os01g68010 | Os01g0908100 | - | Detail |
| C1H1g00934 | 1:34,993,325-34,997,431 | + | C2H1g27794 | CX1g002877 | LOC_Os01g68020 | Os01g0908200 | OsBT | Detail |
| C1H1g26380 | 1:34,998,549-34,999,821 | - | C2H1g06918 | CX1g005492 | LOC_Os01g68030 | Os01g0908400 | - | Detail |
| C1H1g26157 | 1:35,001,120-35,004,353 | - | C2H1g30537 | CX1g002681 | LOC_Os01g68040 | Os01g0908500 | - | Detail |
| C1H1g02663 | 1:35,011,447-35,013,794 | + | C2H1g27819 | CX1g003019 | LOC_Os01g68050 | Os01g0908600 | OsProT1 | Detail |
| C1H1g28238 | 1:35,014,156-35,018,530 | - | C2H1g20684 | CX1g003471 | LOC_Os01g68060 | Os01g0908700 | - | Detail |
| C1H1g12819 | 1:35,026,038-35,027,558 | + | C2H1g22636 | CX1g001370 | LOC_Os01g68070 | Os01g0908800 | - | Detail |
| C1H1g18966 | 1:35,031,109-35,032,479 | - | - | CX1g007120 | LOC_Os01g68090 | Os01g0909000 | - | Detail |
| C1H1g09218 | 1:35,033,587-35,036,812 | + | C2H1g29519 | CX1g001897 | LOC_Os01g68104 | Os01g0909100 | - | Detail |
| C1H1g22460 | 1:35,039,709-35,040,078 | - | C2H1g05938 | - | - | Os01g0909150 | - | Detail |
| C1H1g21604 | 1:35,041,397-35,051,861 | - | C2H1g23470 | CX1g001307 | LOC_Os01g68120 | Os01g0909200 | OsDCL3a | Detail |
| C1H1g09277 | 1:35,055,480-35,055,878 | + | C2H1g03983 | CX1g000844 | LOC_Os01g68130 | - | - | Detail |
| C1H1g24131 | 1:35,056,030-35,059,812 | + | C2H1g03983 | CX1g000844 | LOC_Os01g68130 | Os01g0909300 | - | Detail |
| C1H1g09913 | 1:35,060,666-35,061,631 | - | - | CX1g002611 | LOC_Os01g68140 | Os01g0909400 | - | Detail |
| C1H1g04879 | 1:35,067,984-35,071,444 | + | C2H1g20920 | CX1g003036 | LOC_Os01g68260 | Os01g0971200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g13076 | 9:1,074,186-1,078,909 | - | C1H9g16164 | CX9g055750 | LOC_Os09g02729 | Os09g0115600 | - | Detail |
| C2H9g18574 | 9:1,080,159-1,080,771 | + | C1H9g08981 | - | - | - | - | Detail |
| C2H9g25985 | 9:1,081,888-1,082,825 | + | C1H9g28466 | CX9g054999 | LOC_Os09g02770 | Os09g0115900 | - | Detail |
| C2H9g09926 | 9:1,104,476-1,105,048 | - | - | CX9g056283 | LOC_Os09g02780 | Os09g0116000 | - | Detail |
| C2H9g23279 | 9:1,110,105-1,115,472 | - | C1H9g21332 | CX9g055162 | LOC_Os09g02790 | Os09g0116050 | - | Detail |
| C2H9g04644 | 9:1,130,557-1,143,021 | + | C1H9g29492 | CX9g056724 | LOC_Os09g02810 | Os09g0116400 | - | Detail |
| C2H9g22732 | 9:1,145,303-1,147,196 | - | - | CX9g055488 | - | - | - | Detail |
| C2H9g00107 | 9:1,150,518-1,151,141 | - | - | CX9g057906 | LOC_Os09g02830 | Os09g0116800 | MADS78 | Detail |
| C2H9g06624 | 9:1,163,054-1,163,302 | - | - | CX9g057461 | - | Os09g0116900 | - | Detail |
| C2H9g11741 | 9:1,221,569-1,226,009 | - | C1H9g13392 | CX9g057143 | LOC_Os09g03090 | Os09g0119100 | - | Detail |
| C2H9g02668 | 9:1,244,928-1,246,433 | + | - | CX9g055648 | LOC_Os09g03140 | Os09g0119600 | - | Detail |
| C2H9g21669 | 9:1,265,570-1,268,523 | + | C1H9g28426 | CX9g057886 | LOC_Os09g03210 | Os09g0120100 | - | Detail |
| C2H9g18201 | 9:1,291,805-1,316,788 | + | C1H9g22761 | CX9g055691 | LOC_Os09g03370 | Os09g0121000 | OsSMC6 | Detail |
| C2H9g13235 | 9:1,366,892-1,368,363 | + | C1H9g26557 | CX9g057481 | LOC_Os09g03490 | Os09g0121900 | - | Detail |
| C2H9g13516 | 9:1,372,683-1,374,035 | + | C1H9g10296 | CX9g055867 | LOC_Os09g03500 | Os09g0122000 | - | Detail |
| C2H9g16547 | 9:1,410,681-1,419,869 | + | - | - | - | Os09g0122500 | - | Detail |
| C2H9g23970 | 9:1,450,894-1,456,896 | + | C1H9g12405 | CX9g057056 | LOC_Os09g03600 | Os09g0123100 | - | Detail |
| C2H9g12853 | 9:1,463,079-1,472,080 | + | C1H9g01360 | CX9g057275 | LOC_Os09g03610 | Os09g0123200 | - | Detail |
| C2H9g03310 | 9:1,476,356-1,483,333 | + | C1H9g19981 | CX9g058087 | LOC_Os09g03620 | Os09g0123300 | - | Detail |
| C2H9g23078 | 9:1,483,604-1,484,898 | - | C1H9g25910 | - | - | Os09g0123400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |