| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g21861 | 1:32,584,401-32,588,189 | + | C2H1g03435 | CX1g004784 | LOC_Os01g63420 | Os01g0853400 | OsCOI1a, OsCOI1, Os_F0728 | Detail |
| C1H1g01084 | 1:32,595,967-32,596,413 | + | C2H1g21411 | CX1g005287 | - | - | - | Detail |
| C1H1g22221 | 1:32,598,743-32,600,421 | - | C2H1g02642 | CX1g001449 | LOC_Os01g63460 | Os01g0853700 | - | Detail |
| C1H1g01372 | 1:32,605,722-32,606,705 | + | - | CX1g000120 | LOC_Os01g63470 | Os01g0853800 | - | Detail |
| C1H1g16925 | 1:32,626,638-32,628,089 | + | C2H1g23760 | CX1g000832 | LOC_Os01g63480 | Os01g0854000 | - | Detail |
| C1H1g13840 | 1:32,637,580-32,637,996 | + | - | CX1g007164 | LOC_Os01g63500 | Os01g0854400 | - | Detail |
| C1H1g30766 | 1:32,643,690-32,644,390 | - | C2H1g15087 | CX1g000677 | LOC_Os01g63510 | Os01g0854500 | QHB | Detail |
| C1H1g14296 | 1:32,652,785-32,654,422 | + | C2H1g13017 | CX1g004974 | LOC_Os01g63540 | Os01g0854800 | OsCYP86A9 | Detail |
| C1H1g06653 | 1:32,656,012-32,659,317 | - | C2H1g11964 | CX1g000343 | LOC_Os01g63580 | Os01g0855000 | - | Detail |
| C1H1g12873 | 1:32,677,253-32,679,894 | + | C2H1g27825 | CX1g005974 | LOC_Os01g63620 | Os01g0855200 | - | Detail |
| C1H1g14003 | 1:32,694,266-32,696,395 | + | C2H1g08166 | CX1g003617 | LOC_Os01g63680 | Os01g0855400 | Os2R_MYB17 | Detail |
| C1H1g30734 | 1:32,699,757-32,701,181 | - | - | CX1g004624 | LOC_Os01g63690 | Os01g0855600 | - | Detail |
| C1H1g14553 | 1:32,707,902-32,711,602 | + | C2H1g04964 | CX1g004920 | LOC_Os01g63710 | Os01g0856000 | - | Detail |
| C1H1g19008 | 1:32,740,280-32,746,644 | + | C2H1g15998 | CX1g001894 | LOC_Os01g63770 | Os01g0856500 | - | Detail |
| C1H1g09781 | 1:32,748,069-32,755,499 | - | C2H1g00745 | CX1g000142 | LOC_Os01g63780 | Os01g0856600 | - | Detail |
| C1H1g00466 | 1:32,757,991-32,758,467 | + | C2H5g12625 | CX1g001837 | LOC_Os01g63800 | Os01g0856800 | - | Detail |
| C1H1g21752 | 1:32,761,915-32,763,335 | + | C2H1g08502 | CX1g000133 | LOC_Os01g63810 | Os01g0856900 | SBDCP1 | Detail |
| C1H1g03217 | 1:32,763,720-32,771,691 | - | C2H1g12263 | CX1g007132 | LOC_Os01g63820 | Os01g0857000 | - | Detail |
| C1H1g17452 | 1:32,774,455-32,775,804 | - | C2H1g17962 | CX1g006058 | LOC_Os01g63830 | Os01g0857200 | - | Detail |
| C1H1g18078 | 1:32,777,706-32,781,386 | - | C2H1g17753 | CX1g002484 | LOC_Os01g63840 | Os01g0857300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g11969 | 4:5,221,015-5,224,282 | + | C1H4g11815 | CX4g035074 | LOC_Os04g10800 | Os04g0186800 | - | Detail |
| C2H4g19548 | 4:5,283,702-5,285,081 | - | C1H4g09118 | CX4g034265 | LOC_Os04g10924 | Os04g0188433 | - | Detail |
| C2H4g27826 | 4:5,335,593-5,344,108 | + | C1H4g10643 | CX4g034149 | LOC_Os10g10750 | - | - | Detail |
| C2H4g28479 | 4:5,363,757-5,366,254 | - | C1H4g08698 | CX4g033296 | LOC_Os04g11050 | - | - | Detail |
| C2H4g11851 | 4:5,369,125-5,369,379 | + | C1H4g00572 | CX4g036247 | - | - | - | Detail |
| C2H4g27215 | 4:5,380,679-5,381,228 | - | - | CX4g033879 | - | - | - | Detail |
| C2H4g10522 | 4:5,381,294-5,381,494 | - | - | - | - | - | - | Detail |
| C2H4g18335 | 4:5,382,350-5,385,564 | + | C1H4g23966 | CX4g033863 | LOC_Os04g11120 | - | - | Detail |
| C2H4g21960 | 4:5,386,340-5,387,386 | - | C1H4g00233 | CX4g034351 | LOC_Os04g11130 | Os04g0189400 | - | Detail |
| C2H4g08762 | 4:5,389,589-5,390,312 | - | C1H4g01025 | CX4g034351 | LOC_Os04g11165 | Os04g0189800 | - | Detail |
| C2H4g03842 | 4:5,405,318-5,406,168 | - | C1H4g00199 | CX4g034351 | LOC_Os04g11195 | Os04g0189400 | - | Detail |
| C2H4g16099 | 4:5,428,013-5,428,312 | - | C1H4g19133 | CX4g033558 | LOC_Os04g11400 | Os04g0191500 | - | Detail |
| C2H4g13067 | 4:5,467,381-5,469,797 | - | - | CX4g033690 | LOC_Os04g11524 | Os04g0192350 | - | Detail |
| C2H4g25761 | 4:5,473,808-5,481,527 | - | C1H4g05621 | CX4g033552 | LOC_Os04g11640 | Os04g0193200 | - | Detail |
| C2H4g17214 | 4:5,486,409-5,490,229 | - | - | - | - | - | - | Detail |
| C2H4g11285 | 4:5,496,864-5,499,368 | + | C1H4g31574 | CX4g034453 | LOC_Os04g11640 | Os04g0193200 | - | Detail |
| C2H4g17840 | 4:5,525,327-5,527,543 | - | - | CX4g034687 | - | - | - | Detail |
| C2H4g23687 | 4:5,555,374-5,558,560 | + | C1H4g01782 | CX4g036003 | LOC_Os04g11640 | Os04g0193200 | - | Detail |
| C2H4g26263 | 4:5,562,649-5,563,875 | - | C1H4g23201 | CX4g033050 | LOC_Os04g11660 | Os04g0193300 | - | Detail |
| C2H4g10370 | 4:5,752,764-5,753,124 | - | C1H4g02299 | CX4g033253 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |