| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g20143 | 1:31,987,794-31,990,960 | + | C2H1g09224 | CX1g000114 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| C1H1g19514 | 1:31,992,421-31,993,980 | - | C2H1g21773 | CX1g000325 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| C1H1g29893 | 1:32,007,669-32,008,127 | - | C2H1g18215 | CX1g001065 | LOC_Os01g62310 | - | - | Detail |
| C1H1g00377 | 1:32,008,788-32,009,901 | - | C2H1g27558 | CX1g001065 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| C1H1g17139 | 1:32,017,474-32,019,413 | - | C2H1g18392 | CX1g004150 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| C1H1g12130 | 1:32,025,615-32,026,759 | + | C2H1g21625 | CX1g003133 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| C1H1g21585 | 1:32,032,310-32,033,584 | - | C2H1g05303 | CX1g001868 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| C1H1g08278 | 1:32,036,050-32,040,980 | - | C2H1g18206 | CX1g005410 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| C1H1g27442 | 1:32,048,806-32,054,280 | + | C2H1g01645 | CX1g006283 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| C1H1g29013 | 1:32,054,965-32,057,733 | + | C2H1g14112 | CX1g001946 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| C1H1g20425 | 1:32,062,521-32,063,627 | + | C2H1g22797 | CX1g000812 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| C1H1g09787 | 1:32,064,224-32,071,896 | - | C2H1g16312 | CX1g005408 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| C1H1g04968 | 1:32,084,495-32,087,400 | + | C2H1g22514 | CX1g003735 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| C1H1g14751 | 1:32,092,309-32,095,261 | - | C2H1g04788 | CX1g004737 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| C1H1g07793 | 1:32,103,798-32,106,521 | - | C2H1g08845 | CX1g005658 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| C1H1g12370 | 1:32,108,857-32,114,415 | - | C2H1g06756 | CX1g000259 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| C1H1g05990 | 1:32,115,188-32,115,835 | - | C2H1g03150 | CX1g006004 | LOC_Os01g62510 | Os01g0972800 | - | Detail |
| C1H1g15936 | 1:32,119,622-32,120,266 | - | C2H1g11458 | CX1g006004 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| C1H1g02981 | 1:32,129,185-32,132,691 | - | C2H6g28684 | CX1g006531 | LOC_Os03g62810 | - | - | Detail |
| C1H1g19031 | 1:32,132,893-32,134,636 | - | C2H1g15515 | CX1g006003 | LOC_Os01g62530 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g27690 | 5:15,136,997-15,141,711 | - | C1H5g31068 | CX5g038850 | LOC_Os05g30990 | Os05g0373500 | - | Detail |
| C2H5g08611 | 5:15,148,017-15,149,620 | + | C1H5g09200 | CX5g039863 | LOC_Os05g31000 | Os05g0373700 | - | Detail |
| C2H5g08322 | 5:15,152,862-15,153,535 | + | - | CX5g037088 | - | - | - | Detail |
| C2H5g03401 | 5:15,156,395-15,160,312 | + | C1H5g04117 | - | - | - | - | Detail |
| C2H5g30069 | 5:15,172,573-15,174,488 | + | C1H5g20196 | CX5g039645 | LOC_Os05g31040 | Os05g0374200 | OsCKX9 | Detail |
| C2H5g03570 | 5:15,182,755-15,193,593 | + | C1H5g11987 | CX5g037517 | LOC_Os05g31056 | Os05g0374600 | - | Detail |
| C2H5g20713 | 5:15,206,795-15,212,652 | - | C1H5g22476 | CX5g039341 | LOC_Os05g31110 | Os05g0375100 | OsHXK10 | Detail |
| C2H5g21390 | 5:15,229,464-15,234,183 | - | C1H5g21966 | CX5g036757 | LOC_Os05g31140 | Os05g0375400 | OsEGL1 | Detail |
| C2H5g07216 | 5:15,250,256-15,253,292 | + | C1H5g26423 | CX5g038239 | LOC_Os05g31160 | Os05g0375600 | - | Detail |
| C2H5g06087 | 5:15,264,778-15,271,729 | - | C1H5g20894 | CX5g039310 | LOC_Os05g31200 | Os05g0376000 | - | Detail |
| C2H5g11462 | 5:15,274,481-15,280,927 | - | C1H5g02831 | CX5g038768 | LOC_Os05g31254 | Os05g0376600 | - | Detail |
| C2H5g10157 | 5:15,282,591-15,283,338 | - | C1H5g06568 | CX5g038571 | LOC_Os05g31280 | Os05g0376800 | - | Detail |
| C2H5g00006 | 5:15,289,492-15,291,656 | - | C1H5g12763 | CX5g040067 | LOC_Os05g31290 | Os05g0377000 | - | Detail |
| C2H5g17233 | 5:15,309,088-15,309,231 | + | C1H5g27622 | - | LOC_Os05g31370 | - | - | Detail |
| C2H5g14904 | 5:15,312,599-15,314,227 | + | C1H5g14584 | CX5g040971 | LOC_Os05g31380 | Os05g0378200 | - | Detail |
| C2H5g05514 | 5:15,362,084-15,364,022 | - | C1H5g26766 | CX5g037505 | LOC_Os05g31470 | - | - | Detail |
| C2H5g07919 | 5:15,370,826-15,375,815 | - | C1H5g21416 | CX5g040361 | LOC_Os05g31480 | Os05g0378800 | - | Detail |
| C2H5g27417 | 5:15,376,344-15,381,134 | - | C1H5g03148 | CX5g038969 | LOC_Os05g31490 | Os05g0378900 | - | Detail |
| C2H5g25052 | 5:15,391,008-15,392,979 | - | C1H5g20720 | - | - | - | - | Detail |
| C2H5g30556 | 5:15,405,504-15,409,808 | + | C1H5g06063 | CX5g040570 | LOC_Os05g31610 | Os05g0380800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |