| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g20143 | 1:31,987,794-31,990,960 | + | C2H1g09224 | CX1g000114 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| C1H1g19514 | 1:31,992,421-31,993,980 | - | C2H1g21773 | CX1g000325 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| C1H1g29893 | 1:32,007,669-32,008,127 | - | C2H1g18215 | CX1g001065 | LOC_Os01g62310 | - | - | Detail |
| C1H1g00377 | 1:32,008,788-32,009,901 | - | C2H1g27558 | CX1g001065 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| C1H1g17139 | 1:32,017,474-32,019,413 | - | C2H1g18392 | CX1g004150 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| C1H1g12130 | 1:32,025,615-32,026,759 | + | C2H1g21625 | CX1g003133 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| C1H1g21585 | 1:32,032,310-32,033,584 | - | C2H1g05303 | CX1g001868 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| C1H1g08278 | 1:32,036,050-32,040,980 | - | C2H1g18206 | CX1g005410 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| C1H1g27442 | 1:32,048,806-32,054,280 | + | C2H1g01645 | CX1g006283 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| C1H1g29013 | 1:32,054,965-32,057,733 | + | C2H1g14112 | CX1g001946 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| C1H1g20425 | 1:32,062,521-32,063,627 | + | C2H1g22797 | CX1g000812 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| C1H1g09787 | 1:32,064,224-32,071,896 | - | C2H1g16312 | CX1g005408 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| C1H1g04968 | 1:32,084,495-32,087,400 | + | C2H1g22514 | CX1g003735 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| C1H1g14751 | 1:32,092,309-32,095,261 | - | C2H1g04788 | CX1g004737 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| C1H1g07793 | 1:32,103,798-32,106,521 | - | C2H1g08845 | CX1g005658 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| C1H1g12370 | 1:32,108,857-32,114,415 | - | C2H1g06756 | CX1g000259 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| C1H1g05990 | 1:32,115,188-32,115,835 | - | C2H1g03150 | CX1g006004 | LOC_Os01g62510 | Os01g0972800 | - | Detail |
| C1H1g15936 | 1:32,119,622-32,120,266 | - | C2H1g11458 | CX1g006004 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| C1H1g02981 | 1:32,129,185-32,132,691 | - | C2H6g28684 | CX1g006531 | LOC_Os03g62810 | - | - | Detail |
| C1H1g19031 | 1:32,132,893-32,134,636 | - | C2H1g15515 | CX1g006003 | LOC_Os01g62530 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g18224 | 5:4,227,210-4,230,972 | + | C1H5g05974 | CX5g038289 | LOC_Os05g09380 | Os05g0185800 | - | Detail |
| C2H5g05596 | 5:4,233,794-4,234,505 | - | C1H5g28043 | CX5g040038 | LOC_Os05g09400 | Os05g0186000 | - | Detail |
| C2H5g21372 | 5:4,235,358-4,237,338 | - | C1H5g30722 | CX5g037460 | LOC_Os05g09410 | Os05g0186100 | - | Detail |
| C2H5g01818 | 5:4,259,249-4,262,399 | - | C1H5g29951 | CX5g040773 | LOC_Os05g09440 | Os05g0186300 | OscytME2 | Detail |
| C2H5g09922 | 5:4,281,169-4,286,884 | - | - | CX5g040790 | - | - | - | Detail |
| C2H5g14302 | 5:4,295,553-4,296,733 | + | C1H5g15338 | CX5g038771 | LOC_Os05g09480 | Os05g0186900 | - | Detail |
| C2H5g05087 | 5:4,299,101-4,302,177 | + | C1H5g17719 | CX5g038344 | LOC_Os05g09490 | Os05g0187000 | - | Detail |
| C2H5g26943 | 5:4,303,262-4,306,796 | - | C1H5g12871 | CX5g040622 | LOC_Os05g09500 | Os05g0187100 | HXK7, OsHXK7 | Detail |
| C2H5g15839 | 5:4,329,455-4,331,044 | + | C1H5g02122 | CX5g037764 | LOC_Os05g09520 | Os05g0187500 | GW5, qSW5/GW5, GSE5 | Detail |
| C2H5g22129 | 5:4,356,213-4,358,586 | + | C1H5g17901 | - | LOC_Os05g09530 | - | - | Detail |
| C2H5g03022 | 5:4,358,933-4,359,934 | - | C1H5g08885 | CX5g038920 | LOC_Os05g09540 | - | - | Detail |
| C2H5g16747 | 5:4,361,635-4,364,800 | - | C1H5g25239 | CX5g037837 | LOC_Os05g09550 | Os05g0187800 | OsDER1 | Detail |
| C2H5g21878 | 5:4,382,435-4,382,827 | + | C1H5g18908 | CX5g040429 | LOC_Os05g09600 | Os05g0188300 | - | Detail |
| C2H5g20106 | 5:4,387,389-4,395,973 | + | C1H5g23924 | CX5g039467 | LOC_Os05g09620 | Os05g0188500 | - | Detail |
| C2H5g29497 | 5:4,398,575-4,407,238 | + | C1H5g20831 | CX5g037834 | LOC_Os05g09630 | Os05g0188600 | - | Detail |
| C2H5g23942 | 5:4,414,270-4,415,498 | + | C1H5g28584 | CX5g038113 | LOC_Os05g09650 | Os05g0188800 | - | Detail |
| C2H5g16237 | 5:4,417,528-4,419,900 | - | C1H5g04541 | CX5g040777 | LOC_Os05g10210 | Os05g0190500 | - | Detail |
| C2H5g26411 | 5:4,431,813-4,433,520 | - | C1H5g30574 | CX5g039264 | LOC_Os05g09704 | Os05g0189300 | - | Detail |
| C2H5g22250 | 5:4,445,415-4,451,156 | - | C1H5g13089 | CX5g036899 | LOC_Os05g09724 | Os05g0189900 | - | Detail |
| C2H5g13503 | 5:4,462,377-4,467,058 | - | C1H5g13089 | CX5g036899 | LOC_Os05g09724 | Os05g0189900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |