| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g20143 | 1:31,987,794-31,990,960 | + | C2H1g09224 | CX1g000114 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| C1H1g19514 | 1:31,992,421-31,993,980 | - | C2H1g21773 | CX1g000325 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| C1H1g29893 | 1:32,007,669-32,008,127 | - | C2H1g18215 | CX1g001065 | LOC_Os01g62310 | - | - | Detail |
| C1H1g00377 | 1:32,008,788-32,009,901 | - | C2H1g27558 | CX1g001065 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| C1H1g17139 | 1:32,017,474-32,019,413 | - | C2H1g18392 | CX1g004150 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| C1H1g12130 | 1:32,025,615-32,026,759 | + | C2H1g21625 | CX1g003133 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| C1H1g21585 | 1:32,032,310-32,033,584 | - | C2H1g05303 | CX1g001868 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| C1H1g08278 | 1:32,036,050-32,040,980 | - | C2H1g18206 | CX1g005410 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| C1H1g27442 | 1:32,048,806-32,054,280 | + | C2H1g01645 | CX1g006283 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| C1H1g29013 | 1:32,054,965-32,057,733 | + | C2H1g14112 | CX1g001946 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| C1H1g20425 | 1:32,062,521-32,063,627 | + | C2H1g22797 | CX1g000812 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| C1H1g09787 | 1:32,064,224-32,071,896 | - | C2H1g16312 | CX1g005408 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| C1H1g04968 | 1:32,084,495-32,087,400 | + | C2H1g22514 | CX1g003735 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| C1H1g14751 | 1:32,092,309-32,095,261 | - | C2H1g04788 | CX1g004737 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| C1H1g07793 | 1:32,103,798-32,106,521 | - | C2H1g08845 | CX1g005658 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| C1H1g12370 | 1:32,108,857-32,114,415 | - | C2H1g06756 | CX1g000259 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| C1H1g05990 | 1:32,115,188-32,115,835 | - | C2H1g03150 | CX1g006004 | LOC_Os01g62510 | Os01g0972800 | - | Detail |
| C1H1g15936 | 1:32,119,622-32,120,266 | - | C2H1g11458 | CX1g006004 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| C1H1g02981 | 1:32,129,185-32,132,691 | - | C2H6g28684 | CX1g006531 | LOC_Os03g62810 | - | - | Detail |
| C1H1g19031 | 1:32,132,893-32,134,636 | - | C2H1g15515 | CX1g006003 | LOC_Os01g62530 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g11864 | 1:17,096,261-17,096,714 | + | C1H1g07615 | - | LOC_Os01g33160 | Os01g0516200 | - | Detail |
| C2H1g16479 | 1:17,097,920-17,098,963 | + | C1H1g07615 | - | LOC_Os01g33160 | Os01g0516200 | - | Detail |
| C2H1g29780 | 1:17,113,489-17,115,504 | - | C1H1g14011 | CX1g001599 | - | Os01g0298301 | - | Detail |
| C2H1g11260 | 1:17,117,421-17,119,306 | + | C1H1g03884 | - | LOC_Os01g33160 | Os01g0516600 | - | Detail |
| C2H1g29427 | 1:17,123,499-17,129,290 | - | C1H1g13083 | CX1g000632 | LOC_Os01g33230 | Os01g0516700 | - | Detail |
| C2H1g12851 | 1:17,133,168-17,133,446 | + | - | CX1g003534 | - | - | - | Detail |
| C2H1g22414 | 1:17,133,862-17,146,800 | - | C1H1g03571 | CX1g005992 | LOC_Os01g33260 | Os01g0516900 | - | Detail |
| C2H1g00935 | 1:17,162,879-17,164,306 | - | C1H1g26291 | CX1g004281 | LOC_Os01g33300 | Os01g0517500 | OsPG2 | Detail |
| C2H1g19175 | 1:17,179,764-17,180,536 | - | C1H1g15043 | CX1g001381 | LOC_Os01g33350 | Os01g0517800 | OsFl3 | Detail |
| C2H1g11828 | 1:17,184,142-17,186,197 | + | C1H1g16914 | CX1g005386 | LOC_Os01g33360 | Os01g0517900 | - | Detail |
| C2H1g06564 | 1:17,189,528-17,191,193 | - | C1H1g19776 | CX1g001381 | LOC_Os01g33370 | Os01g0518000 | - | Detail |
| C2H1g15782 | 1:17,221,122-17,225,643 | - | C1H1g04145 | CX1g004547 | LOC_Os01g33400 | Os01g0519700 | - | Detail |
| C2H1g11609 | 1:17,232,924-17,240,066 | - | C1H1g01073 | CX1g000474 | LOC_Os01g33420 | Os01g0518500 | - | Detail |
| C2H1g02009 | 1:17,240,893-17,242,225 | + | C1H1g03032 | CX1g001414 | - | - | - | Detail |
| C2H1g08274 | 1:17,245,664-17,255,985 | - | C1H1g14202 | CX1g003150 | - | Os01g0518651 | - | Detail |
| C2H1g08445 | 1:17,260,529-17,261,242 | - | C1H1g06909 | - | - | - | - | Detail |
| C2H1g21312 | 1:17,284,109-17,291,458 | + | C1H1g27418 | CX1g005208 | LOC_Os08g09860 | - | - | Detail |
| C2H1g17187 | 1:17,314,202-17,314,786 | + | C1H1g28314 | CX1g003392 | LOC_Os01g33670 | Os01g0520500 | - | Detail |
| C2H1g08242 | 1:17,315,778-17,320,987 | - | C1H1g02683 | CX1g006219 | LOC_Os01g33684 | Os01g0520600 | - | Detail |
| C2H1g00800 | 1:17,369,559-17,377,378 | + | C1H1g04217 | CX1g002325 | LOC_Os01g33784 | Os01g0521400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |