| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g20143 | 1:31,987,794-31,990,960 | + | C2H1g09224 | CX1g000114 | LOC_Os01g62290 | Os01g0840100 | cHsp70-1 | Detail |
| C1H1g19514 | 1:31,992,421-31,993,980 | - | C2H1g21773 | CX1g000325 | LOC_Os01g62300 | Os01g0840200 | - | Detail |
| C1H1g29893 | 1:32,007,669-32,008,127 | - | C2H1g18215 | CX1g001065 | LOC_Os01g62310 | - | - | Detail |
| C1H1g00377 | 1:32,008,788-32,009,901 | - | C2H1g27558 | CX1g001065 | LOC_Os01g62310 | Os01g0840300 | - | Detail |
| C1H1g17139 | 1:32,017,474-32,019,413 | - | C2H1g18392 | CX1g004150 | LOC_Os01g62350 | Os01g0840700 | - | Detail |
| C1H1g12130 | 1:32,025,615-32,026,759 | + | C2H1g21625 | CX1g003133 | LOC_Os01g62370 | Os01g0841000 | - | Detail |
| C1H1g21585 | 1:32,032,310-32,033,584 | - | C2H1g05303 | CX1g001868 | LOC_Os01g62380 | Os01g0841100 | - | Detail |
| C1H1g08278 | 1:32,036,050-32,040,980 | - | C2H1g18206 | CX1g005410 | LOC_Os01g62390 | Os01g0841200 | - | Detail |
| C1H1g27442 | 1:32,048,806-32,054,280 | + | C2H1g01645 | CX1g006283 | LOC_Os01g62410 | Os01g0841500 | OsMYB3R-2, OsMYB3R2, MYB3R2 | Detail |
| C1H1g29013 | 1:32,054,965-32,057,733 | + | C2H1g14112 | CX1g001946 | LOC_Os01g62420 | Os01g0841600 | OscTPI | Detail |
| C1H1g20425 | 1:32,062,521-32,063,627 | + | C2H1g22797 | CX1g000812 | LOC_Os01g62430 | Os01g0841700 | OsERG1, OsERG1a, Rpp17-1 | Detail |
| C1H1g09787 | 1:32,064,224-32,071,896 | - | C2H1g16312 | CX1g005408 | LOC_Os01g62440 | Os01g0841800 | - | Detail |
| C1H1g04968 | 1:32,084,495-32,087,400 | + | C2H1g22514 | CX1g003735 | LOC_Os01g62460 | Os01g0842200 | - | Detail |
| C1H1g14751 | 1:32,092,309-32,095,261 | - | C2H1g04788 | CX1g004737 | LOC_Os01g62480 | Os01g0842400 | - | Detail |
| C1H1g07793 | 1:32,103,798-32,106,521 | - | C2H1g08845 | CX1g005658 | LOC_Os01g62490 | Os01g0842500 | - | Detail |
| C1H1g12370 | 1:32,108,857-32,114,415 | - | C2H1g06756 | CX1g000259 | LOC_Os01g62500 | Os01g0842600 | - | Detail |
| C1H1g05990 | 1:32,115,188-32,115,835 | - | C2H1g03150 | CX1g006004 | LOC_Os01g62510 | Os01g0972800 | - | Detail |
| C1H1g15936 | 1:32,119,622-32,120,266 | - | C2H1g11458 | CX1g006004 | LOC_Os01g62514 | Os01g0842801 | - | Detail |
| C1H1g02981 | 1:32,129,185-32,132,691 | - | C2H6g28684 | CX1g006531 | LOC_Os03g62810 | - | - | Detail |
| C1H1g19031 | 1:32,132,893-32,134,636 | - | C2H1g15515 | CX1g006003 | LOC_Os01g62530 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05002 | 3:30,799,208-30,801,619 | + | C1H3g05972 | CX3g030524 | LOC_Os03g59100 | Os03g0805700 | - | Detail |
| C2H3g16039 | 3:30,803,176-30,806,569 | + | C1H3g19569 | CX3g030524 | LOC_Os03g59110 | Os03g0805900 | - | Detail |
| C2H3g16313 | 3:30,810,710-30,813,445 | + | C1H3g07939 | CX3g030524 | LOC_Os03g59120 | Os03g0805900 | - | Detail |
| C2H3g13126 | 3:30,813,982-30,817,679 | - | C1H3g06635 | CX3g030941 | LOC_Os03g59160 | Os03g0806400 | - | Detail |
| C2H3g27858 | 3:30,818,748-30,821,803 | + | C1H3g22886 | CX3g027239 | LOC_Os03g59170 | Os03g0806500 | - | Detail |
| C2H3g13367 | 3:30,822,855-30,823,925 | + | C1H3g27480 | CX3g026016 | LOC_Os03g59180 | Os03g0806600 | - | Detail |
| C2H3g13696 | 3:30,845,847-30,846,211 | + | C1H7g05822 | CX3g025205 | LOC_Os03g59210 | Os03g0806800 | - | Detail |
| C2H3g21807 | 3:30,847,354-30,849,118 | + | C1H3g13375 | CX3g026400 | LOC_Os03g59220 | Os03g0806900 | - | Detail |
| C2H3g14008 | 3:30,859,274-30,863,143 | + | C1H3g26885 | CX3g026921 | LOC_Os03g59240 | Os03g0807100 | - | Detail |
| C2H3g07423 | 3:30,864,450-30,866,489 | - | C1H3g11037 | CX3g028660 | LOC_Os03g59250 | Os03g0807200 | OsDUF1639.1 | Detail |
| C2H3g00577 | 3:30,874,937-30,878,164 | - | C1H3g25570 | CX3g025343 | LOC_Os03g59264 | Os03g0832200 | - | Detail |
| C2H3g14894 | 3:30,878,168-30,880,747 | - | C1H3g16706 | CX3g025343 | LOC_Os03g59264 | Os03g0807400 | - | Detail |
| C2H3g04449 | 3:30,883,216-30,883,413 | + | C1H3g08998 | CX3g027491 | LOC_Os03g59280 | Os03g0807500 | - | Detail |
| C2H3g28856 | 3:30,883,798-30,885,915 | + | - | - | - | - | - | Detail |
| C2H3g23454 | 3:30,886,501-30,889,916 | - | C1H3g08149 | CX3g030187 | LOC_Os03g59290 | Os03g0807600 | - | Detail |
| C2H3g28073 | 3:30,897,367-30,899,475 | + | C1H3g21319 | CX3g028893 | LOC_Os03g59300 | Os03g0807700 | - | Detail |
| C2H3g16190 | 3:30,900,921-30,902,538 | + | C1H3g20626 | CX3g030569 | LOC_Os03g59310 | Os03g0807800 | - | Detail |
| C2H3g13799 | 3:30,903,813-30,905,238 | + | C1H3g05345 | CX3g030704 | LOC_Os03g59320 | Os03g0807900 | - | Detail |
| C2H3g07099 | 3:30,909,294-30,911,925 | + | C1H3g05454 | CX3g029953 | LOC_Os03g59330 | Os03g0808000 | - | Detail |
| C2H3g27778 | 3:30,912,106-30,918,033 | - | C1H3g31749 | CX3g029274 | LOC_Os03g59340 | Os03g0808100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |