| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g29335 | 1:31,872,138-31,873,792 | + | C2H1g10234 | CX1g003679 | LOC_Os01g62010 | Os01g0837200 | - | Detail |
| C1H1g10810 | 1:31,875,534-31,879,239 | + | C2H1g23741 | CX1g003883 | LOC_Os01g62020 | Os01g0837300 | OsUXS4 | Detail |
| C1H1g12894 | 1:31,880,496-31,885,845 | + | C2H1g07218 | CX1g001070 | LOC_Os01g62040 | Os01g0837500 | - | Detail |
| C1H1g00961 | 1:31,891,635-31,892,414 | + | C2H1g26587 | CX1g002011 | LOC_Os01g62060 | Os01g0837600 | DGP1 | Detail |
| C1H1g17576 | 1:31,896,488-31,896,748 | - | - | CX1g005449 | - | Os01g0837700 | - | Detail |
| C1H1g29125 | 1:31,897,160-31,901,682 | - | C2H1g28819 | CX1g002419 | LOC_Os01g62070 | Os01g0837800 | - | Detail |
| C1H1g06942 | 1:31,905,964-31,909,673 | - | C2H1g16663 | CX1g006172 | LOC_Os01g62080 | Os01g0837900 | - | Detail |
| C1H1g02866 | 1:31,913,861-31,914,142 | - | - | CX1g005503 | LOC_Os01g62110 | Os01g0838200 | - | Detail |
| C1H1g31822 | 1:31,917,634-31,918,939 | - | - | - | - | Os01g0838350 | - | Detail |
| C1H1g06334 | 1:31,921,791-31,922,438 | - | C2H5g00940 | CX1g002459 | LOC_Os01g62130 | Os01g0838600 | - | Detail |
| C1H1g29226 | 1:31,928,732-31,932,201 | + | C2H1g02384 | CX1g002865 | LOC_Os05g38610 | Os01g0838800 | - | Detail |
| C1H1g17733 | 1:31,932,734-31,935,801 | - | C2H1g20151 | CX1g005211 | LOC_Os01g62160 | Os01g0838900 | - | Detail |
| C1H1g09133 | 1:31,958,484-31,959,032 | + | C2H5g12287 | CX1g002459 | LOC_Os01g62190 | Os01g0839100 | ZFP179 | Detail |
| C1H1g26731 | 1:31,959,909-31,960,129 | - | C2H1g08125 | CX1g003395 | LOC_Os01g62200 | Os01g0839200 | OsDSR2 | Detail |
| C1H1g10232 | 1:31,960,858-31,962,212 | - | C2H1g16708 | CX1g003395 | LOC_Os01g62200 | Os01g0839200 | OsDSR2 | Detail |
| C1H1g15957 | 1:31,964,741-31,966,881 | + | C2H1g22109 | CX1g004020 | LOC_Os01g62210 | Os01g0839300 | - | Detail |
| C1H1g05756 | 1:31,968,329-31,969,699 | + | C2H1g29778 | CX1g004020 | LOC_Os01g62220 | Os01g0839400 | - | Detail |
| C1H1g25854 | 1:31,970,603-31,971,022 | - | C2H1g27325 | CX1g002747 | LOC_Os01g62230 | Os01g0839500 | - | Detail |
| C1H1g17963 | 1:31,973,996-31,977,554 | - | C2H1g11723 | CX1g000448 | LOC_Os01g62244 | Os01g0839700 | - | Detail |
| C1H1g24415 | 1:31,983,398-31,984,141 | - | C2H1g28281 | - | LOC_Os01g62260 | Os01g0839900 | OsOLP1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06482 | 2:29,371,707-29,373,467 | + | C1H2g24237 | CX2g020266 | LOC_Os02g52480 | Os02g0762400 | KRP1, OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI | Detail |
| C2H2g14994 | 2:29,379,968-29,380,435 | - | - | CX2g020064 | LOC_Os02g52490 | Os02g0762600 | SGL1 | Detail |
| C2H2g29446 | 2:29,385,573-29,394,313 | - | C1H2g04159 | CX2g022518 | LOC_Os02g52510 | Os02g0762800 | OsRad54 | Detail |
| C2H2g01751 | 2:29,397,002-29,397,304 | - | - | CX2g023245 | LOC_Os02g52540 | - | - | Detail |
| C2H2g11954 | 2:29,401,275-29,402,154 | + | C1H2g10187 | CX2g023141 | LOC_Os02g52550 | Os02g0763000 | OsCNR1, TGW2, OsFWL1 | Detail |
| C2H2g00538 | 2:29,415,549-29,416,080 | + | C1H2g21759 | - | - | - | - | Detail |
| C2H2g18956 | 2:29,419,129-29,422,357 | + | C1H2g09761 | CX2g024148 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| C2H2g03175 | 2:29,423,273-29,426,274 | + | C1H2g15844 | CX2g024148 | LOC_Os02g52590 | Os02g0763800 | - | Detail |
| C2H2g23310 | 2:29,426,521-29,426,997 | + | C1H2g15324 | - | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| C2H2g02605 | 2:29,429,194-29,432,334 | + | C1H2g26295 | CX2g023343 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| C2H2g18172 | 2:29,435,564-29,438,153 | + | C1H2g14291 | CX2g019855 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| C2H2g07475 | 2:29,442,236-29,444,534 | + | C1H2g16896 | CX2g023343 | LOC_Os02g52640 | Os02g0764400 | - | Detail |
| C2H2g26785 | 2:29,444,959-29,446,785 | - | C1H2g16728 | CX2g022219 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| C2H2g22917 | 2:29,448,988-29,449,743 | - | C1H2g23870 | CX2g021656 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| C2H2g26543 | 2:29,462,389-29,463,967 | + | C1H2g10581 | CX2g018991 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| C2H2g29404 | 2:29,466,319-29,467,913 | - | C1H2g08973 | CX2g021489 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| C2H2g24763 | 2:29,471,454-29,472,131 | - | C1H2g26635 | CX2g019501 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| C2H2g20003 | 2:29,474,844-29,478,669 | - | C1H2g13987 | CX2g022397 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| C2H2g16702 | 2:29,485,155-29,485,984 | + | C1H2g23770 | CX2g019269 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| C2H2g14916 | 2:29,487,761-29,492,896 | - | C1H2g16420 | CX2g021391 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |