| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12416 | 1:31,702,167-31,706,617 | - | C2H1g03973 | CX1g000146 | LOC_Os01g61760 | Os01g0834100 | - | Detail |
| C1H1g06212 | 1:31,710,480-31,721,299 | + | C2H1g25411 | CX1g002696 | LOC_Os01g61780 | Os01g0834200 | - | Detail |
| C1H1g30061 | 1:31,728,722-31,730,161 | - | C2H1g11057 | CX1g000392 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| C1H1g07712 | 1:31,731,952-31,736,728 | - | C2H1g10042 | CX1g001710 | LOC_Os01g61814 | Os01g0834600 | - | Detail |
| C1H1g15578 | 1:31,739,248-31,743,641 | + | C2H1g11754 | CX1g001115 | LOC_Os01g61830 | Os01g0834700 | - | Detail |
| C1H1g28438 | 1:31,746,927-31,747,166 | - | C2H1g04024 | CX1g005583 | LOC_Os01g61840 | Os01g0834800 | - | Detail |
| C1H1g29053 | 1:31,755,807-31,765,030 | - | C2H1g07677 | CX1g004964 | LOC_Os01g61860 | Os01g0835000 | - | Detail |
| C1H1g14368 | 1:31,780,490-31,785,814 | + | C2H1g02343 | CX1g001158 | LOC_Os01g61880 | Os01g0835500 | - | Detail |
| C1H1g23056 | 1:31,796,546-31,797,747 | - | C2H1g27745 | CX1g000977 | LOC_Os01g61900 | Os01g0835700 | OsCCT01 | Detail |
| C1H1g04133 | 1:31,802,050-31,805,363 | - | C2H1g21602 | CX1g007240 | LOC_Os01g61910 | Os01g0835800 | - | Detail |
| C1H1g21523 | 1:31,809,401-31,809,712 | + | C2H5g09767 | CX5g040997 | LOC_Os01g61920 | Os01g0835900 | - | Detail |
| C1H1g12123 | 1:31,814,530-31,824,148 | + | C2H1g29300 | CX1g000993 | LOC_Os01g61930 | Os05g0462600 | - | Detail |
| C1H1g13267 | 1:31,831,536-31,833,788 | + | C2H1g27556 | CX1g006810 | LOC_Os01g61940 | Os01g0836600 | OsABCG3 | Detail |
| C1H1g04982 | 1:31,839,610-31,840,164 | - | C2H1g15144 | - | LOC_Os01g61950 | - | - | Detail |
| C1H1g15863 | 1:31,841,733-31,842,944 | - | C2H1g29885 | CX1g001966 | LOC_Os01g61960 | Os01g0836700 | - | Detail |
| C1H1g03833 | 1:31,844,908-31,846,257 | - | C2H1g29885 | CX1g004021 | LOC_Os01g61970 | Os01g0836800 | - | Detail |
| C1H1g17938 | 1:31,849,282-31,849,788 | + | - | - | - | - | - | Detail |
| C1H1g23659 | 1:31,855,439-31,856,533 | + | - | CX1g000026 | LOC_Os01g61980 | Os01g0836900 | - | Detail |
| C1H1g22081 | 1:31,859,405-31,862,509 | - | C2H1g06537 | CX1g004745 | LOC_Os01g61990 | Os01g0837000 | - | Detail |
| C1H1g08351 | 1:31,864,744-31,866,551 | + | C2H1g25983 | CX1g000248 | LOC_Os01g62000 | Os01g0837100 | OsPLL2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g03888 | 4:28,295,410-28,295,805 | - | C1H4g29756 | CX4g033466 | LOC_Os04g55170 | Os04g0554500 | OsR3L1, OsHyPRP06/R3L1, OsHyPRP06 | Detail |
| C2H4g28358 | 4:28,299,164-28,310,153 | - | C1H4g08012 | CX4g036449 | LOC_Os04g55190 | Os04g0644675 | - | Detail |
| C2H4g15694 | 4:28,314,152-28,316,257 | + | C1H4g06360 | CX4g033425 | LOC_Os04g55200 | Os04g0644700 | - | Detail |
| C2H4g05660 | 4:28,317,215-28,322,007 | + | C1H4g02968 | CX4g032169 | LOC_Os04g55210 | Os04g0644800 | - | Detail |
| C2H4g12779 | 4:28,327,588-28,332,623 | + | C1H4g08695 | CX4g032248 | LOC_Os04g55220 | Os04g0644900 | - | Detail |
| C2H4g19510 | 4:28,335,294-28,348,459 | + | C1H4g06283 | CX4g033214 | LOC_Os04g55230 | Os04g0645100 | - | Detail |
| C2H4g14418 | 4:28,351,996-28,352,583 | - | C1H4g18694 | CX4g032908 | LOC_Os04g55240 | Os04g0645200 | - | Detail |
| C2H4g22066 | 4:28,355,865-28,356,620 | + | - | CX4g031778 | LOC_Os04g55250 | Os04g0645500 | - | Detail |
| C2H4g01093 | 4:28,356,757-28,360,600 | - | C1H4g06884 | CX4g036437 | LOC_Os04g55260 | Os04g0645600 | - | Detail |
| C2H4g27076 | 4:28,366,816-28,370,143 | - | C1H4g28592 | CX4g032085 | LOC_Os04g55280 | Os04g0646050 | - | Detail |
| C2H4g00324 | 4:28,370,940-28,372,339 | - | C1H4g12666 | CX4g031654 | LOC_Os04g55290 | Os04g0646100 | - | Detail |
| C2H4g28891 | 4:28,404,351-28,405,010 | - | C1H4g04933 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C2H4g25523 | 4:28,405,169-28,407,565 | - | C1H4g01013 | CX4g032699 | LOC_Os04g55360 | Os04g0647300 | - | Detail |
| C2H4g00723 | 4:28,428,202-28,432,244 | - | C1H4g17955 | CX4g032705 | LOC_Os04g55410 | Os04g0647800 | - | Detail |
| C2H4g03628 | 4:28,435,119-28,438,284 | + | C1H4g25822 | CX4g034505 | LOC_Os04g55420 | Os04g0647900 | - | Detail |
| C2H4g20686 | 4:28,441,751-28,444,579 | + | C1H4g16013 | CX4g034215 | LOC_Os04g55440 | Os04g0648200 | - | Detail |
| C2H4g26419 | 4:28,449,270-28,454,054 | - | C1H4g25119 | CX4g031467 | LOC_Os04g55480 | Os04g0648500 | - | Detail |
| C2H4g12403 | 4:28,455,832-28,456,650 | + | - | CX4g034038 | LOC_Os04g55490 | Os04g0648600 | - | Detail |
| C2H4g12616 | 4:28,459,506-28,465,690 | + | C1H4g03048 | CX4g032703 | LOC_Os04g55500 | Os04g0648700 | - | Detail |
| C2H4g21483 | 4:28,474,766-28,480,256 | + | C1H4g02593 | CX4g033088 | LOC_Os04g55510 | Os04g0648800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |