| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12416 | 1:31,702,167-31,706,617 | - | C2H1g03973 | CX1g000146 | LOC_Os01g61760 | Os01g0834100 | - | Detail |
| C1H1g06212 | 1:31,710,480-31,721,299 | + | C2H1g25411 | CX1g002696 | LOC_Os01g61780 | Os01g0834200 | - | Detail |
| C1H1g30061 | 1:31,728,722-31,730,161 | - | C2H1g11057 | CX1g000392 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| C1H1g07712 | 1:31,731,952-31,736,728 | - | C2H1g10042 | CX1g001710 | LOC_Os01g61814 | Os01g0834600 | - | Detail |
| C1H1g15578 | 1:31,739,248-31,743,641 | + | C2H1g11754 | CX1g001115 | LOC_Os01g61830 | Os01g0834700 | - | Detail |
| C1H1g28438 | 1:31,746,927-31,747,166 | - | C2H1g04024 | CX1g005583 | LOC_Os01g61840 | Os01g0834800 | - | Detail |
| C1H1g29053 | 1:31,755,807-31,765,030 | - | C2H1g07677 | CX1g004964 | LOC_Os01g61860 | Os01g0835000 | - | Detail |
| C1H1g14368 | 1:31,780,490-31,785,814 | + | C2H1g02343 | CX1g001158 | LOC_Os01g61880 | Os01g0835500 | - | Detail |
| C1H1g23056 | 1:31,796,546-31,797,747 | - | C2H1g27745 | CX1g000977 | LOC_Os01g61900 | Os01g0835700 | OsCCT01 | Detail |
| C1H1g04133 | 1:31,802,050-31,805,363 | - | C2H1g21602 | CX1g007240 | LOC_Os01g61910 | Os01g0835800 | - | Detail |
| C1H1g21523 | 1:31,809,401-31,809,712 | + | C2H5g09767 | CX5g040997 | LOC_Os01g61920 | Os01g0835900 | - | Detail |
| C1H1g12123 | 1:31,814,530-31,824,148 | + | C2H1g29300 | CX1g000993 | LOC_Os01g61930 | Os05g0462600 | - | Detail |
| C1H1g13267 | 1:31,831,536-31,833,788 | + | C2H1g27556 | CX1g006810 | LOC_Os01g61940 | Os01g0836600 | OsABCG3 | Detail |
| C1H1g04982 | 1:31,839,610-31,840,164 | - | C2H1g15144 | - | LOC_Os01g61950 | - | - | Detail |
| C1H1g15863 | 1:31,841,733-31,842,944 | - | C2H1g29885 | CX1g001966 | LOC_Os01g61960 | Os01g0836700 | - | Detail |
| C1H1g03833 | 1:31,844,908-31,846,257 | - | C2H1g29885 | CX1g004021 | LOC_Os01g61970 | Os01g0836800 | - | Detail |
| C1H1g17938 | 1:31,849,282-31,849,788 | + | - | - | - | - | - | Detail |
| C1H1g23659 | 1:31,855,439-31,856,533 | + | - | CX1g000026 | LOC_Os01g61980 | Os01g0836900 | - | Detail |
| C1H1g22081 | 1:31,859,405-31,862,509 | - | C2H1g06537 | CX1g004745 | LOC_Os01g61990 | Os01g0837000 | - | Detail |
| C1H1g08351 | 1:31,864,744-31,866,551 | + | C2H1g25983 | CX1g000248 | LOC_Os01g62000 | Os01g0837100 | OsPLL2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g30106 | 1:28,086,993-28,094,801 | + | C1H1g10866 | CX1g004902 | LOC_Os01g54910 | Os01g0752700 | - | Detail |
| C2H1g14113 | 1:28,096,618-28,100,262 | + | C1H1g19556 | - | - | - | - | Detail |
| C2H1g30674 | 1:28,101,470-28,105,320 | + | C1H1g31047 | CX1g005633 | LOC_Os01g43910 | Os01g0897000 | OsCDKB1;1 | Detail |
| C2H1g22228 | 1:28,106,499-28,109,530 | - | C1H1g19883 | CX1g003710 | LOC_Os01g54920 | Os01g0752800 | - | Detail |
| C2H1g29792 | 1:28,113,523-28,117,327 | - | C1H1g05885 | CX1g004059 | LOC_Os01g54930 | Os01g0753000 | OsVOZ1 | Detail |
| C2H1g17930 | 1:28,120,303-28,125,488 | + | C1H1g21710 | CX1g000869 | LOC_Os01g54940 | Os01g0753100 | - | Detail |
| C2H1g29811 | 1:28,126,195-28,130,622 | - | C1H1g22929 | CX1g006390 | LOC_Os01g54950 | Os01g0753150 | - | Detail |
| C2H1g20006 | 1:28,131,701-28,133,347 | + | C1H1g16292 | CX1g006340 | LOC_Os01g54969 | Os01g0753300 | OsASMT1 | Detail |
| C2H1g09497 | 1:28,133,635-28,139,651 | - | C1H1g07442 | CX1g002732 | LOC_Os01g54990 | Os01g0753500 | OsARF3lb | Detail |
| C2H1g17359 | 1:28,157,866-28,158,797 | + | C1H1g02806 | CX1g006658 | LOC_Os01g55020 | Os01g0754000 | - | Detail |
| C2H1g07609 | 1:28,160,970-28,162,766 | - | C1H1g16947 | CX1g002933 | LOC_Os01g55030 | Os01g0754100 | - | Detail |
| C2H1g07292 | 1:28,164,267-28,173,631 | - | C1H1g05578 | CX1g005591 | LOC_Os01g55040 | Os01g0754200 | - | Detail |
| C2H1g26542 | 1:28,173,942-28,178,857 | - | C1H1g11544 | CX1g006946 | LOC_Os01g55050 | Os01g0754500 | - | Detail |
| C2H1g25651 | 1:28,210,538-28,219,018 | - | C1H1g27304 | CX1g006404 | LOC_Os01g55094 | Os01g0755100 | - | Detail |
| C2H1g07282 | 1:28,222,260-28,229,222 | + | C1H1g29987 | CX1g000336 | LOC_Os01g55100 | Os01g0755500 | OsPCF7, PCF7 | Detail |
| C2H1g26286 | 1:28,269,737-28,272,246 | - | C1H1g10544 | CX1g005575 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| C2H1g10412 | 1:28,276,740-28,277,501 | - | C1H1g11346 | - | LOC_Os01g55140 | Os01g0756101 | - | Detail |
| C2H1g26594 | 1:28,277,519-28,277,863 | - | - | - | - | - | - | Detail |
| C2H1g27103 | 1:28,279,910-28,280,341 | + | C1H1g21888 | CX1g006243 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| C2H1g14895 | 1:28,281,075-28,282,001 | + | C1H1g31515 | CX1g006243 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |