| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g04890 | 9:19,069,124-19,073,047 | + | C2H9g17992 | CX9g056849 | LOC_Os09g39380 | Os09g0567300 | MDHAR, OsMDHAR, OsMDAR3, OsMDHAR3 | Detail |
| C1H9g13266 | 9:19,073,094-19,076,233 | + | C2H9g25680 | CX9g058049 | LOC_Os09g39390 | Os09g0567366 | - | Detail |
| C1H9g16090 | 9:19,078,531-19,081,006 | + | C2H9g00653 | CX9g056022 | LOC_Os09g39400 | Os09g0567400 | - | Detail |
| C1H9g25909 | 9:19,085,026-19,090,786 | + | C2H9g10548 | CX9g057497 | LOC_Os09g39410 | Os09g0567500 | - | Detail |
| C1H9g01897 | 9:19,091,906-19,096,902 | + | C2H9g15634 | CX9g055257 | LOC_Os09g39420 | Os09g0567700 | - | Detail |
| C1H9g27590 | 9:19,096,960-19,100,398 | - | C2H9g07527 | CX9g058075 | LOC_Os09g39430 | Os09g0567800 | - | Detail |
| C1H9g04610 | 9:19,103,896-19,106,558 | - | C2H9g28844 | CX9g058045 | LOC_Os09g39440 | Os09g0567900 | - | Detail |
| C1H9g06631 | 9:19,108,871-19,113,014 | + | C2H9g14034 | CX9g055030 | LOC_Os09g39462 | Os09g0568000 | - | Detail |
| C1H9g15019 | 9:19,113,667-19,113,891 | + | - | CX9g058185 | - | - | - | Detail |
| C1H9g18800 | 9:19,114,406-19,115,801 | + | C2H9g07303 | CX9g055723 | LOC_Os09g39474 | Os09g0568100 | - | Detail |
| C1H9g25533 | 9:19,116,932-19,117,909 | - | C2H9g14146 | CX9g055477 | LOC_Os09g39490 | Os09g0568200 | - | Detail |
| C1H9g00933 | 9:19,121,436-19,122,161 | - | - | CX9g056373 | LOC_Os09g39510 | Os09g0568500 | - | Detail |
| C1H9g05388 | 9:19,125,266-19,125,907 | - | - | CX9g056956 | LOC_Os09g39520 | Os09g0568600 | - | Detail |
| C1H9g08565 | 9:19,127,695-19,128,339 | - | - | CX9g057185 | LOC_Os09g39530 | Os09g0568700 | - | Detail |
| C1H9g27100 | 9:19,129,439-19,130,916 | - | C2H9g28333 | CX9g057377 | LOC_Os09g39540 | Os09g0568800 | - | Detail |
| C1H9g30656 | 9:19,131,188-19,133,085 | + | C2H9g03364 | CX9g055404 | LOC_Os09g39550 | Os09g0568900 | IF1-2, IF<sub>1</sub>-2 | Detail |
| C1H9g22287 | 9:19,134,907-19,136,848 | + | C2H9g03868 | CX9g057720 | LOC_Os09g39560 | Os09g0569100 | - | Detail |
| C1H9g23985 | 9:19,140,226-19,140,612 | + | C2H9g00291 | CX9g057873 | - | - | - | Detail |
| C1H9g14979 | 9:19,141,650-19,145,064 | + | C2H9g00291 | CX9g057873 | LOC_Os09g39570 | Os09g0569200 | - | Detail |
| C1H9g21337 | 9:19,145,011-19,148,481 | - | C2H9g21708 | CX9g056948 | LOC_Os09g39580 | Os09g0569300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g00038 | 3:19,981,640-19,983,595 | + | C1H3g08754 | CX3g026495 | LOC_Os03g38950 | Os03g0586500 | - | Detail |
| C2H3g11125 | 3:19,984,399-19,987,753 | - | C1H3g06874 | CX3g031261 | LOC_Os03g38960 | Os03g0586600 | - | Detail |
| C2H3g25834 | 3:19,991,913-20,004,555 | - | C1H3g18468 | CX3g028836 | LOC_Os03g38970 | Os03g0586700 | PALD | Detail |
| C2H3g21968 | 3:20,010,954-20,019,304 | - | C1H3g11741 | CX3g027203 | LOC_Os03g38980 | Os03g0586800 | - | Detail |
| C2H3g04567 | 3:20,019,454-20,025,968 | + | C1H3g27042 | CX3g026912 | LOC_Os03g38990 | Os03g0586900 | OsPLS2 | Detail |
| C2H3g23894 | 3:20,027,470-20,030,489 | + | C1H3g17183 | CX3g030907 | LOC_Os03g39000 | Os03g0587000 | - | Detail |
| C2H3g20201 | 3:20,031,238-20,032,671 | + | C1H3g08966 | CX3g026983 | LOC_Os03g39010 | Os03g0587100 | - | Detail |
| C2H3g30660 | 3:20,033,025-20,038,825 | - | C1H3g03134 | CX3g025439 | LOC_Os03g39020 | Os03g0587200 | - | Detail |
| C2H3g22828 | 3:20,047,828-20,050,143 | + | C1H3g06709 | CX3g026068 | LOC_Os03g39040 | Os03g0587600 | - | Detail |
| C2H3g01127 | 3:20,060,374-20,065,415 | + | C1H3g00174 | CX3g026068 | LOC_Os03g39129 | Os03g0588200 | - | Detail |
| C2H3g05989 | 3:20,074,692-20,077,448 | + | C1H3g31500 | CX3g026068 | LOC_Os03g39160 | Os03g0588600 | - | Detail |
| C2H3g21270 | 3:20,081,994-20,088,736 | + | C1H3g15293 | CX3g027455 | LOC_Os03g39170 | Os03g0588800 | - | Detail |
| C2H3g15399 | 3:20,109,752-20,110,504 | - | - | CX3g027460 | LOC_Os03g39220 | Os03g0589100 | - | Detail |
| C2H3g02679 | 3:20,112,480-20,115,256 | - | C1H3g01503 | CX3g027116 | LOC_Os03g39230 | Os03g0589300 | - | Detail |
| C2H3g24251 | 3:20,116,216-20,116,646 | - | C1H3g25070 | CX3g024950 | - | - | - | Detail |
| C2H3g07550 | 3:20,121,103-20,122,682 | - | - | CX3g027460 | LOC_Os03g39370 | Os03g0589400 | - | Detail |
| C2H3g04403 | 3:20,139,994-20,140,279 | + | C1H3g22951 | - | LOC_Os03g39380 | Os10g0571100 | - | Detail |
| C2H3g14133 | 3:20,172,232-20,173,928 | - | C1H3g05834 | CX3g031061 | LOC_Os03g39520 | Os03g0591600 | - | Detail |
| C2H3g11830 | 3:20,200,756-20,205,228 | - | C1H3g15078 | CX3g026609 | LOC_Os03g39540 | Os03g0248300 | - | Detail |
| C2H3g18871 | 3:20,216,755-20,217,015 | + | C1H3g02377 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |