| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g01697 | 9:18,907,183-18,911,124 | + | C2H9g21433 | CX9g056918 | LOC_Os09g39020 | Os09g0563700 | - | Detail |
| C1H9g21274 | 9:18,913,040-18,922,259 | - | C2H9g26806 | CX9g057338 | LOC_Os09g39034 | Os09g0563800 | - | Detail |
| C1H9g18913 | 9:18,930,687-18,931,931 | - | C2H9g05243 | CX9g057269 | LOC_Os09g39050 | Os09g0563950 | - | Detail |
| C1H9g07375 | 9:18,933,374-18,935,186 | - | C2H9g27013 | CX9g058103 | LOC_Os09g39060 | Os09g0564000 | - | Detail |
| C1H9g22045 | 9:18,938,382-18,941,213 | - | C2H9g21279 | CX9g058103 | LOC_Os09g39070 | Os09g0564200 | - | Detail |
| C1H9g27358 | 9:18,961,003-18,962,435 | - | C2H9g00317 | CX9g058103 | LOC_Os09g39120 | Os09g0564700 | - | Detail |
| C1H9g06269 | 9:18,972,824-18,975,733 | + | C2H9g29707 | CX9g058103 | LOC_Os09g39160 | Os09g0565000 | - | Detail |
| C1H9g03665 | 9:18,984,162-18,986,733 | - | C2H9g17980 | CX9g055784 | LOC_Os09g39180 | Os09g0565200 | OsCRP1 | Detail |
| C1H9g23294 | 9:18,989,037-18,990,919 | - | C2H9g06735 | CX9g055878 | LOC_Os09g39190 | Os09g0565300 | - | Detail |
| C1H9g02800 | 9:18,992,248-18,994,333 | - | C2H9g05243 | CX9g055878 | LOC_Os09g39190 | Os09g0565350 | - | Detail |
| C1H9g15519 | 9:18,994,553-18,998,288 | - | C2H9g29461 | CX9g056354 | LOC_Os09g39200 | Os09g0565400 | - | Detail |
| C1H9g26476 | 9:19,000,231-19,017,250 | + | C2H9g27919 | CX9g057714 | - | Os09g0565500 | - | Detail |
| C1H9g13374 | 9:19,018,415-19,022,439 | + | C2H9g07424 | CX9g057785 | LOC_Os09g39220 | Os09g0565600 | - | Detail |
| C1H9g26902 | 9:19,024,274-19,025,479 | + | C2H9g05946 | CX9g055093 | LOC_Os09g39230 | Os09g0565700 | - | Detail |
| C1H9g14496 | 9:19,027,577-19,028,557 | - | - | - | - | - | - | Detail |
| C1H9g23958 | 9:19,028,585-19,029,799 | + | C2H9g19055 | CX9g057620 | LOC_Os09g39260 | Os09g0566050 | - | Detail |
| C1H9g25655 | 9:19,031,108-19,037,130 | - | C2H9g15395 | CX9g056260 | LOC_Os09g39270 | Os09g0566100 | - | Detail |
| C1H9g18076 | 9:19,043,978-19,047,177 | - | C2H9g06176 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C1H9g21987 | 9:19,052,322-19,059,181 | - | C2H9g09064 | CX9g056096 | LOC_Os09g39320 | Os09g0566550 | - | Detail |
| C1H9g31128 | 9:19,060,904-19,062,271 | - | C2H9g08732 | CX9g056096 | LOC_Os09g39350 | Os09g0567000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g11742 | 2:5,273,597-5,275,375 | + | C1H2g24396 | CX2g021980 | LOC_Os02g10800 | Os02g0202400 | BT1-1, OsBT1-1, OsEnS-29 | Detail |
| C2H2g19152 | 2:5,276,189-5,277,880 | - | C1H2g08933 | CX2g024114 | LOC_Os02g10810 | Os02g0202500 | - | Detail |
| C2H2g03245 | 2:5,280,679-5,283,557 | - | C1H2g01124 | CX2g021583 | LOC_Os02g10820 | Os02g0202600 | - | Detail |
| C2H2g06319 | 2:5,284,423-5,289,562 | - | C1H2g31302 | CX2g022814 | LOC_Os02g10830 | Os02g0202700 | OsSAT1;2 | Detail |
| C2H2g07043 | 2:5,291,017-5,294,153 | - | C1H2g29373 | CX2g019052 | LOC_Os02g10850 | Os02g0202900 | - | Detail |
| C2H2g24991 | 2:5,296,406-5,298,717 | - | C1H2g02349 | CX2g019052 | LOC_Os02g10860 | Os02g0203000 | OsHY5L1, OsbZIP18 | Detail |
| C2H2g13298 | 2:5,322,255-5,323,208 | - | - | - | - | Os02g0578201 | - | Detail |
| C2H2g10759 | 2:5,330,786-5,335,148 | - | C1H2g24176 | CX2g020524 | LOC_Os02g10900 | Os02g0203500 | RLS1 | Detail |
| C2H2g18458 | 2:5,338,312-5,339,617 | - | C1H2g09288 | CX2g021071 | LOC_Os02g10920 | Os02g0203700 | SRZ1 | Detail |
| C2H2g20592 | 2:5,353,511-5,361,697 | + | C1H2g01355 | CX2g021033 | LOC_Os02g10970 | Os02g0121300 | LRT2, CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2 | Detail |
| C2H2g16217 | 2:5,363,787-5,366,941 | + | C1H2g02729 | CX2g020882 | LOC_Os02g10990 | Os02g0204400 | - | Detail |
| C2H2g15057 | 2:5,370,856-5,372,360 | + | C1H2g29802 | CX2g024407 | LOC_Os02g11000 | Os02g0204500 | - | Detail |
| C2H2g26988 | 2:5,391,116-5,393,386 | - | C1H2g04626 | CX2g022229 | LOC_Os02g11020 | Os02g0204700 | - | Detail |
| C2H2g03770 | 2:5,423,064-5,425,361 | - | C1H2g15482 | CX2g019164 | LOC_Os02g11030 | Os02g0205000 | - | Detail |
| C2H2g05927 | 2:5,426,667-5,427,963 | - | C1H2g23876 | CX2g022500 | LOC_Os02g11040 | Os02g0205200 | - | Detail |
| C2H2g06065 | 2:5,433,561-5,438,148 | - | C1H2g25099 | CX2g023949 | LOC_Os02g11050 | Os02g0205300 | - | Detail |
| C2H2g04587 | 2:5,440,616-5,445,478 | + | C1H2g05033 | CX2g022352 | LOC_Os02g11060 | Os02g0205400 | - | Detail |
| C2H2g22003 | 2:5,446,223-5,447,903 | - | C1H2g08007 | CX2g023216 | LOC_Os02g11070 | Os02g0205500 | - | Detail |
| C2H2g16132 | 2:5,478,867-5,480,336 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11110 | Os02g0206100 | - | Detail |
| C2H2g24159 | 2:5,485,258-5,486,748 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11130 | Os02g0206400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |