| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g16516 | 9:18,781,081-18,784,060 | - | C2H9g11187 | CX9g056989 | LOC_Os09g38750 | Os09g0560400 | - | Detail |
| C1H9g03926 | 9:18,784,309-18,787,769 | + | C2H9g11268 | CX9g056436 | LOC_Os09g38755 | Os09g0560450 | - | Detail |
| C1H9g25922 | 9:18,788,830-18,789,888 | + | C2H9g20950 | CX9g057721 | LOC_Os09g38759 | Os09g0560500 | - | Detail |
| C1H9g27653 | 9:18,790,640-18,792,824 | + | C2H9g17838 | CX9g054913 | LOC_Os09g38768 | Os09g0560600 | - | Detail |
| C1H9g00606 | 9:18,793,614-18,796,090 | + | C2H9g22121 | CX9g055954 | LOC_Os09g38772 | Os09g0560700 | - | Detail |
| C1H9g04369 | 9:18,795,128-18,802,136 | - | C2H9g18757 | CX9g055464 | LOC_Os09g38784 | Os09g0560850 | - | Detail |
| C1H9g02125 | 9:18,797,080-18,799,775 | + | C2H9g11291 | CX9g055954 | LOC_Os09g38777 | Os09g0560800 | - | Detail |
| C1H9g29491 | 9:18,802,790-18,807,223 | - | C2H9g18757 | CX9g056926 | LOC_Os09g38790 | Os09g0560900 | SIP1 | Detail |
| C1H9g03389 | 9:18,807,938-18,810,000 | + | C2H9g00048 | - | LOC_Os09g38800 | Os09g0561000 | - | Detail |
| C1H9g11670 | 9:18,824,298-18,828,071 | + | C2H9g28628 | CX9g057226 | LOC_Os09g38834 | Os09g0561450 | - | Detail |
| C1H9g10532 | 9:18,828,559-18,831,491 | + | C2H9g07673 | CX9g057226 | LOC_Os09g38840 | Os09g0561500 | WAK90, OsWAK90 | Detail |
| C1H9g28362 | 9:18,832,308-18,835,407 | + | C2H9g04667 | - | LOC_Os09g38850 | Os09g0561600 | DEES1, WAK91, OsWAK91, OsDEES1 | Detail |
| C1H9g04110 | 9:18,843,619-18,847,509 | + | C2H9g09243 | - | LOC_Os09g38900 | Os09g0562400 | - | Detail |
| C1H9g19363 | 9:18,851,650-18,854,226 | + | C2H9g11141 | CX9g057226 | LOC_Os09g38910 | Os09g0562600 | WAK92, OsWAK92, OsDEES1-L4 | Detail |
| C1H9g18815 | 9:18,854,692-18,856,575 | - | C2H9g27162 | CX9g057033 | LOC_Os09g38920 | Os09g0497500 | - | Detail |
| C1H9g04134 | 9:18,857,654-18,864,956 | - | C2H9g03456 | CX9g057411 | LOC_Os09g38930 | Os09g0562750 | - | Detail |
| C1H9g07046 | 9:18,876,099-18,876,873 | + | C2H9g09986 | CX9g055362 | LOC_Os09g38670 | Os09g0559600 | - | Detail |
| C1H9g06523 | 9:18,878,851-18,884,646 | - | C2H9g06709 | CX9g055046 | LOC_Os09g38960 | Os09g0563200 | OsHAK18 | Detail |
| C1H9g19754 | 9:18,888,055-18,893,651 | + | C2H9g01538 | CX9g057500 | LOC_Os09g38970 | Os09g0563250 | - | Detail |
| C1H9g21219 | 9:18,894,185-18,898,267 | + | C2H9g16021 | CX9g054934 | LOC_Os09g38980 | Os09g0563300 | TCD9, OsCPn60alpha3, OsCPn60α3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g20719 | 3:12,657,846-12,662,011 | + | C1H3g00297 | CX3g029824 | LOC_Os03g25110 | Os03g0366700 | - | Detail |
| C2H3g16161 | 3:12,663,669-12,666,069 | - | C1H3g09693 | CX3g026720 | LOC_Os03g25120 | Os03g0366800 | OsHsfB4d | Detail |
| C2H3g05889 | 3:12,680,107-12,690,528 | + | C1H3g11212 | CX3g030531 | LOC_Os03g25140 | Os03g0367000 | - | Detail |
| C2H3g05330 | 3:12,699,863-12,706,390 | + | C1H3g27498 | CX3g026873 | LOC_Os03g25150 | Os03g0367200 | - | Detail |
| C2H3g27128 | 3:12,728,251-12,733,718 | + | C1H3g16020 | CX3g026804 | LOC_Os03g25260 | Os03g0367800 | - | Detail |
| C2H3g07803 | 3:12,737,903-12,739,716 | + | C1H3g25920 | CX3g026151 | LOC_Os03g25270 | Os03g0367900 | - | Detail |
| C2H3g22531 | 3:12,741,090-12,742,166 | - | C1H3g11101 | CX3g025169 | LOC_Os03g25300 | Os03g0368300 | - | Detail |
| C2H3g13125 | 3:12,753,395-12,753,733 | + | - | - | - | - | - | Detail |
| C2H3g20896 | 3:12,754,708-12,755,789 | + | - | - | LOC_Os03g25314 | - | - | Detail |
| C2H3g27289 | 3:12,759,905-12,761,668 | + | C1H3g13259 | CX3g025674 | LOC_Os03g25320 | Os03g0368300 | - | Detail |
| C2H3g12026 | 3:12,771,516-12,772,610 | + | C1H3g26852 | CX3g027878 | LOC_Os03g25330 | Os03g0368900 | - | Detail |
| C2H3g16356 | 3:12,779,596-12,781,116 | + | C1H3g17834 | CX3g025535 | LOC_Os03g25340 | Os03g0369000 | - | Detail |
| C2H3g01197 | 3:12,790,603-12,791,049 | + | C1H3g18190 | - | LOC_Os03g25350 | Os03g0369100 | OsLTPL36, OsCIP1 | Detail |
| C2H3g22819 | 3:12,793,639-12,795,020 | + | C1H3g18951 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C2H3g30332 | 3:12,808,380-12,812,544 | + | - | CX8g053307 | - | - | - | Detail |
| C2H3g12054 | 3:12,815,156-12,816,297 | + | C1H3g18951 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C2H3g12152 | 3:12,821,652-12,822,789 | + | C1H3g00052 | CX3g027308 | LOC_Os03g25370 | Os03g0369000 | - | Detail |
| C2H3g10905 | 3:12,826,088-12,826,663 | + | - | - | - | Os03g0369600 | - | Detail |
| C2H3g04844 | 3:12,829,824-12,831,377 | + | C1H3g00982 | CX3g030217 | LOC_Os03g25380 | Os03g0369700 | - | Detail |
| C2H3g02553 | 3:12,831,824-12,834,946 | - | C1H3g26552 | CX3g027718 | LOC_Os03g25390 | Os03g0369800 | OsNPSN12 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |