| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g09840 | 9:18,366,642-18,367,800 | - | C2H9g28554 | CX9g056393 | LOC_Os09g37976 | Os09g0552600 | - | Detail |
| C1H9g15676 | 9:18,371,536-18,373,702 | + | C2H9g14226 | CX9g054872 | LOC_Os09g38000 | Os09g0552800 | OsNAC109, YL3 | Detail |
| C1H9g26813 | 9:18,376,273-18,378,404 | + | C2H9g12533 | CX9g057788 | LOC_Os09g38010 | Os09g0552900 | - | Detail |
| C1H9g21147 | 9:18,380,724-18,381,035 | - | C2H2g23208 | CX9g057780 | LOC_Os09g38020 | Os09g0553100 | - | Detail |
| C1H9g17635 | 9:18,385,462-18,390,603 | + | C2H9g10941 | CX9g055376 | LOC_Os09g38030 | Os09g0553200 | UGP1, Ugp1, OsUgp1, UGP2, UGP3 | Detail |
| C1H9g26934 | 9:18,391,442-18,394,187 | - | C2H9g21953 | CX9g058064 | LOC_Os09g38040 | Os09g0553300 | - | Detail |
| C1H9g10869 | 9:18,398,653-18,402,515 | + | C2H9g19006 | CX9g056104 | LOC_Os09g38060 | Os09g0553600 | - | Detail |
| C1H9g05696 | 9:18,405,039-18,405,896 | - | C2H9g11910 | - | LOC_Os09g38070 | Os09g0553700 | - | Detail |
| C1H9g00595 | 9:18,408,908-18,410,734 | + | C2H9g05592 | CX9g057943 | LOC_Os09g38080 | Os09g0553800 | - | Detail |
| C1H9g10302 | 9:18,411,472-18,414,138 | + | - | CX9g057138 | LOC_Os09g38090 | Os09g0553900 | - | Detail |
| C1H9g31011 | 9:18,415,061-18,417,614 | - | C2H9g14746 | CX9g057604 | LOC_Os09g38100 | Os09g0554000 | - | Detail |
| C1H9g27301 | 9:18,421,254-18,421,862 | - | C2H9g14838 | CX9g055725 | LOC_Os09g38110 | Os09g0554200 | - | Detail |
| C1H9g27672 | 9:18,429,105-18,433,133 | + | C2H9g06100 | CX9g057048 | LOC_Os09g38130 | Os09g0554300 | OsPILS7a | Detail |
| C1H9g18495 | 9:18,439,341-18,441,965 | + | C2H9g06100 | CX9g057828 | LOC_Os09g38210 | Os09g0555100 | - | Detail |
| C1H9g05514 | 9:18,444,982-18,446,160 | + | C2H9g22067 | CX9g057828 | LOC_Os09g38239 | Os09g0555150 | - | Detail |
| C1H9g12988 | 9:18,449,968-18,464,984 | + | C2H9g17283 | CX9g057564 | LOC_Os09g38268 | Os09g0555200 | OsNRPD1b, OsNRPD1 | Detail |
| C1H9g08888 | 9:18,466,459-18,468,222 | + | - | CX9g057692 | LOC_Os09g38300 | Os09g0555300 | - | Detail |
| C1H9g16951 | 9:18,470,967-18,472,877 | - | C2H9g07064 | CX9g057467 | LOC_Os09g38310 | Os09g0555400 | - | Detail |
| C1H9g00138 | 9:18,474,359-18,477,136 | - | C2H9g08531 | CX9g056693 | LOC_Os09g38320 | Os09g0555500 | OsPSY3 | Detail |
| C1H9g26155 | 9:18,480,718-18,489,628 | - | C2H9g15848 | CX9g056039 | LOC_Os09g38330 | Os09g0555600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28597 | 3:2,972,225-2,972,470 | - | C1H3g08120 | - | LOC_Os03g06790 | Os03g0163600 | - | Detail |
| C2H3g24201 | 3:2,984,055-2,984,324 | - | C1H3g08120 | CX6g044926 | LOC_Os03g06800 | Os03g0163900 | - | Detail |
| C2H3g08001 | 3:2,998,583-3,001,029 | + | C1H3g31538 | CX3g031186 | LOC_Os03g06880 | Os03g0164700 | - | Detail |
| C2H3g12377 | 3:3,002,486-3,004,841 | - | C1H3g13873 | CX3g030325 | LOC_Os03g06890 | Os03g0164800 | - | Detail |
| C2H3g23822 | 3:3,006,975-3,007,508 | + | C1H3g21506 | CX3g029502 | - | Os03g0164901 | - | Detail |
| C2H3g07393 | 3:3,011,056-3,021,317 | - | C1H3g29883 | CX3g026349 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| C2H3g24120 | 3:3,021,674-3,025,793 | - | C1H3g17508 | CX3g027841 | LOC_Os03g06910 | Os03g0165100 | - | Detail |
| C2H3g16754 | 3:3,026,112-3,028,022 | + | C1H3g30143 | - | LOC_Os03g06920 | - | - | Detail |
| C2H3g12144 | 3:3,028,381-3,034,497 | + | C1H3g17985 | CX3g027850 | LOC_Os03g06920 | Os03g0165266 | OsCHR730, CHR730 | Detail |
| C2H3g20116 | 3:3,035,390-3,037,459 | - | C1H3g21677 | CX3g028821 | LOC_Os03g06930 | Os03g0165300 | - | Detail |
| C2H3g10784 | 3:3,037,579-3,039,438 | - | C1H3g31542 | - | - | - | - | Detail |
| C2H3g07914 | 3:3,043,635-3,043,931 | + | C1H3g17647 | CX3g025536 | - | Os03g0165375 | - | Detail |
| C2H3g24716 | 3:3,046,983-3,053,495 | - | C1H3g30263 | CX3g028153 | LOC_Os03g06940 | Os03g0165400 | - | Detail |
| C2H3g14394 | 3:3,061,798-3,072,911 | - | C1H3g12191 | CX3g027771 | LOC_Os03g06950 | Os03g0165600 | - | Detail |
| C2H3g15746 | 3:3,074,102-3,076,440 | + | C1H3g13896 | CX3g030842 | LOC_Os03g06960 | Os03g0165800 | - | Detail |
| C2H3g22818 | 3:3,078,105-3,080,783 | - | C1H3g22228 | CX3g028104 | LOC_Os03g06970 | Os03g0165900 | - | Detail |
| C2H3g18146 | 3:3,081,081-3,081,401 | - | C1H3g16704 | - | - | - | - | Detail |
| C2H3g11279 | 3:3,084,398-3,087,708 | - | C1H3g06157 | CX3g026438 | LOC_Os03g06980 | Os03g0166000 | - | Detail |
| C2H3g30212 | 3:3,089,933-3,092,072 | + | C1H3g11602 | CX3g025523 | LOC_Os03g07000 | Os03g0166100 | - | Detail |
| C2H3g23098 | 3:3,092,794-3,094,670 | + | C1H3g09271 | CX3g027208 | LOC_Os03g07000 | Os03g0166200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |