| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g19525 | 9:17,293,450-17,296,347 | - | C2H9g23489 | CX9g056579 | LOC_Os09g36000 | Os09g0529400 | - | Detail |
| C1H9g27128 | 9:17,296,729-17,300,315 | - | C2H9g27445 | CX9g056877 | LOC_Os09g36020 | Os09g0529700 | OsVPS22 | Detail |
| C1H9g05809 | 9:17,302,119-17,305,961 | + | C2H9g23825 | CX9g055906 | LOC_Os09g36030 | Os09g0529900 | - | Detail |
| C1H9g07466 | 9:17,314,019-17,317,379 | + | C2H9g28583 | CX9g056800 | LOC_Os09g36060 | Os09g0530200 | - | Detail |
| C1H9g12433 | 9:17,317,842-17,320,920 | + | C2H9g03363 | CX9g057922 | LOC_Os09g36070 | Os09g0530275 | - | Detail |
| C1H9g17904 | 9:17,328,162-17,329,786 | + | C2H9g23341 | CX9g056469 | LOC_Os09g36080 | Os09g0530300 | - | Detail |
| C1H9g17327 | 9:17,331,611-17,340,241 | + | C2H9g22638 | CX9g057701 | LOC_Os09g36090 | Os09g0530500 | - | Detail |
| C1H9g09404 | 9:17,341,020-17,343,279 | + | C2H9g01014 | CX9g055918 | LOC_Os09g36100 | Os09g0530700 | - | Detail |
| C1H9g23871 | 9:17,349,163-17,352,477 | + | C2H9g12131 | CX9g055471 | LOC_Os09g36110 | Os09g0530800 | - | Detail |
| C1H9g24630 | 9:17,354,412-17,357,616 | - | C2H9g01895 | CX9g057214 | LOC_Os09g36130 | Os09g0531100 | - | Detail |
| C1H9g07449 | 9:17,383,057-17,384,092 | - | C2H9g23806 | CX9g057463 | LOC_Os09g36160 | Os09g0531600 | OsSHI1 | Detail |
| C1H9g12530 | 9:17,392,757-17,394,375 | - | C2H9g17548 | CX9g055764 | LOC_Os09g36180 | Os09g0531701 | - | Detail |
| C1H9g31859 | 9:17,397,203-17,401,264 | - | C2H9g24133 | CX9g056588 | LOC_Os09g36190 | Os09g0531800 | - | Detail |
| C1H9g23936 | 9:17,402,511-17,406,646 | - | C2H9g14007 | CX9g057674 | LOC_Os09g36190 | Os09g0531900 | OsPDT1 | Detail |
| C1H9g17840 | 9:17,408,765-17,410,448 | - | C2H9g15175 | CX9g054875 | LOC_Os09g36200 | Os09g0532000 | SGR, sgr(t), sgr, OsSGR | Detail |
| C1H9g30254 | 9:17,419,247-17,420,035 | - | C2H9g26470 | CX9g056508 | LOC_Os09g36210 | Os09g0532200 | - | Detail |
| C1H9g21979 | 9:17,421,786-17,426,533 | - | C2H9g26470 | CX9g056292 | LOC_Os09g36220 | Os09g0532400 | - | Detail |
| C1H9g08491 | 9:17,432,340-17,433,560 | + | C2H9g01199 | CX9g055999 | LOC_Os09g36230 | Os09g0532800 | - | Detail |
| C1H9g13364 | 9:17,435,515-17,442,462 | + | C2H9g13859 | CX9g056475 | LOC_Os09g36240 | Os09g0532700 | - | Detail |
| C1H9g05830 | 9:17,444,549-17,446,464 | + | - | CX9g055493 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g06554 | 1:1,267,481-1,270,261 | - | C1H1g14698 | CX1g000136 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| C2H1g21958 | 1:1,273,959-1,277,999 | - | C1H1g30854 | CX1g005762 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| C2H1g24576 | 1:1,278,156-1,280,615 | + | C1H1g00412 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C2H1g17865 | 1:1,282,083-1,282,775 | + | C1H1g25838 | CX1g002042 | LOC_Os01g19970 | Os01g0127450 | - | Detail |
| C2H1g02319 | 1:1,283,305-1,284,401 | + | C1H1g17663 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C2H1g19770 | 1:1,285,305-1,285,871 | + | C1H1g11231 | CX1g002886 | LOC_Os01g03680 | Os01g0127600 | - | Detail |
| C2H1g03781 | 1:1,288,272-1,291,329 | + | C1H1g05668 | CX1g006285 | LOC_Os01g03690 | Os01g0127700 | - | Detail |
| C2H1g13836 | 1:1,297,101-1,302,164 | + | C1H1g08835 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C2H1g25959 | 1:1,312,131-1,313,344 | - | C1H1g25654 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C2H1g01385 | 1:1,324,388-1,326,037 | - | C1H1g31764 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C2H1g18960 | 1:1,326,807-1,329,714 | + | C1H1g04042 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C2H1g15883 | 1:1,329,952-1,330,824 | - | C1H1g30874 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C2H1g19347 | 1:1,331,825-1,337,142 | - | C1H1g07436 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C2H1g18545 | 1:1,345,364-1,353,485 | + | C1H1g20521 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C2H1g10390 | 1:1,366,798-1,368,202 | + | C1H1g27481 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C2H1g17049 | 1:1,379,470-1,382,437 | - | C1H1g30507 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C2H1g13371 | 1:1,395,250-1,396,259 | + | C1H1g11492 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C2H1g20654 | 1:1,408,458-1,408,763 | - | - | CX1g003157 | LOC_Os01g03900 | Os01g0129800 | - | Detail |
| C2H1g29639 | 1:1,411,780-1,414,851 | - | C1H1g30416 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C2H1g19941 | 1:1,416,854-1,417,432 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |