| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g02380 | 9:16,963,644-16,965,107 | + | C2H9g20646 | CX9g056068 | LOC_Os09g34930 | Os09g0521100 | - | Detail |
| C1H9g10173 | 9:16,970,360-16,971,499 | - | C2H8g03110 | - | LOC_Os09g34950 | Os09g0521300 | - | Detail |
| C1H9g10520 | 9:16,973,922-16,977,725 | + | C2H9g14810 | CX9g057233 | LOC_Os09g34960 | Os09g0521400 | - | Detail |
| C1H9g25845 | 9:16,978,628-16,982,043 | - | C2H9g26372 | CX9g055738 | LOC_Os09g34970 | Os09g0521500 | - | Detail |
| C1H9g12508 | 9:16,983,878-16,987,028 | - | C2H9g23293 | CX9g056886 | LOC_Os09g34990 | Os09g0521800 | - | Detail |
| C1H9g18470 | 9:16,987,133-16,989,913 | - | C2H9g23293 | CX9g056886 | LOC_Os09g34990 | Os09g0521800 | - | Detail |
| C1H9g22775 | 9:16,990,571-16,994,638 | + | C2H9g12959 | CX9g058042 | LOC_Os09g35000 | Os09g0521900 | RAD, OsGEN1, rad, rad*, OsRAD, GEN1, OsGEN-L | Detail |
| C1H9g14501 | 9:16,996,288-16,996,956 | - | C2H9g15745 | CX9g056315 | LOC_Os09g35010 | Os09g0522000 | OsDREB1B | Detail |
| C1H9g18822 | 9:16,999,862-17,000,602 | - | C2H9g15745 | CX9g057270 | LOC_Os09g35020 | Os09g0522100 | - | Detail |
| C1H9g24368 | 9:17,004,252-17,005,001 | - | C2H9g15745 | CX9g055958 | LOC_Os09g35030 | Os09g0522200 | OsDREB1A | Detail |
| C1H9g01072 | 9:17,039,373-17,041,007 | - | C2H9g10935 | CX9g057900 | LOC_Os09g35600 | Os09g0524300 | - | Detail |
| C1H9g22926 | 9:17,062,634-17,064,682 | - | C2H9g13075 | CX9g057513 | LOC_Os09g35630 | Os09g0524800 | - | Detail |
| C1H9g31662 | 9:17,073,293-17,076,161 | + | C2H9g25776 | CX9g056603 | LOC_Os09g35670 | Os09g0525200 | - | Detail |
| C1H9g25445 | 9:17,076,742-17,079,386 | - | C2H9g21918 | CX9g055378 | LOC_Os09g35680 | Os09g0525300 | - | Detail |
| C1H9g08911 | 9:17,083,815-17,088,515 | - | C2H9g16534 | CX9g058055 | LOC_Os09g35690 | Os09g0525400 | E3BB | Detail |
| C1H9g02024 | 9:17,089,268-17,089,681 | + | C2H9g00761 | CX9g057849 | LOC_Os09g35700 | Os09g0525500 | - | Detail |
| C1H9g15317 | 9:17,090,344-17,095,359 | - | C2H9g16855 | CX9g057451 | LOC_Os09g35710 | Os09g0525600 | - | Detail |
| C1H9g29308 | 9:17,097,510-17,103,645 | - | C2H9g29379 | CX9g057247 | LOC_Os09g35720 | Os09g0525700 | - | Detail |
| C1H9g08625 | 9:17,105,510-17,108,695 | - | C2H9g07857 | CX9g055034 | LOC_Os09g35730 | Os09g0525900 | - | Detail |
| C1H9g31758 | 9:17,115,330-17,116,050 | + | C2H9g18140 | CX9g054877 | LOC_Os09g35740 | Os09g0526000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07837 | 3:12,240,186-12,240,422 | + | C1H3g29038 | - | - | - | - | Detail |
| C2H3g30335 | 3:12,245,811-12,246,437 | + | C1H3g24260 | CX3g028005 | LOC_Os03g24560 | Os03g0360300 | - | Detail |
| C2H3g23651 | 3:12,249,595-12,252,420 | + | C1H3g06016 | CX3g026622 | - | Os03g0202500 | - | Detail |
| C2H3g11576 | 3:12,259,279-12,263,067 | - | C1H3g10908 | CX3g025165 | LOC_Os03g24520 | Os03g0359700 | - | Detail |
| C2H3g27563 | 3:12,267,546-12,271,810 | - | C1H3g04236 | CX3g029301 | LOC_Os03g24580 | Os03g0360500 | - | Detail |
| C2H3g30143 | 3:12,278,164-12,281,650 | + | C1H3g00317 | CX3g028418 | LOC_Os03g24600 | Os03g0360700 | OsMSRB5 | Detail |
| C2H3g18552 | 3:12,283,269-12,286,896 | + | C1H3g00810 | CX3g030502 | LOC_Os03g24610 | Os03g0360800 | - | Detail |
| C2H3g08848 | 3:12,299,353-12,302,445 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g01009 | 3:12,311,712-12,314,711 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g10773 | 3:12,322,815-12,324,226 | - | C1H3g06434 | CX3g028227 | LOC_Os03g24650 | Os03g0362500 | - | Detail |
| C2H3g17062 | 3:12,325,139-12,325,479 | - | C1H3g14470 | CX3g028227 | LOC_Os03g24690 | Os03g0361500 | - | Detail |
| C2H3g13152 | 3:12,341,926-12,347,771 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24680 | Os03g0361600 | - | Detail |
| C2H3g10176 | 3:12,373,064-12,373,448 | + | - | - | - | Os05g0380200 | - | Detail |
| C2H3g09511 | 3:12,391,665-12,395,308 | - | C1H3g23561 | - | - | - | - | Detail |
| C2H3g25785 | 3:12,397,990-12,399,111 | - | C1H3g19660 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g04211 | 3:12,399,508-12,401,225 | - | C1H3g14470 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g13576 | 3:12,417,591-12,417,910 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24710 | Os03g0362032 | - | Detail |
| C2H3g17100 | 3:12,425,984-12,426,265 | + | C1H3g07323 | CX3g028193 | LOC_Os03g24720 | Os03g0362032 | - | Detail |
| C2H3g06450 | 3:12,426,879-12,429,300 | + | C1H3g06434 | CX3g028227 | LOC_Os03g24760 | Os03g0362500 | - | Detail |
| C2H3g08257 | 3:12,442,084-12,446,166 | - | C1H3g26242 | CX3g030811 | LOC_Os03g24650 | Os03g0361700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |