| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g22239 | 9:15,387,857-15,388,476 | + | - | CX9g056123 | - | - | - | Detail |
| C1H9g10463 | 9:15,390,930-15,396,579 | - | C2H9g25938 | CX9g055724 | LOC_Os09g31090 | Os09g0484300 | - | Detail |
| C1H9g25991 | 9:15,404,902-15,405,309 | + | - | CX9g056981 | LOC_Os09g31100 | - | - | Detail |
| C1H9g21053 | 9:15,411,915-15,412,343 | + | C2H9g09529 | CX9g056137 | LOC_Os09g31120 | Os09g0484800 | - | Detail |
| C1H9g25716 | 9:15,412,962-15,413,769 | + | C2H9g09529 | CX9g056137 | LOC_Os09g31120 | Os09g0484800 | - | Detail |
| C1H9g21552 | 9:15,420,705-15,423,279 | + | C2H9g06729 | CX9g055844 | LOC_Os09g31130 | Os09g0484900 | - | Detail |
| C1H9g28280 | 9:15,445,388-15,450,064 | + | C2H9g05554 | CX9g057232 | LOC_Os09g31140 | Os09g0485600 | - | Detail |
| C1H9g16686 | 9:15,458,593-15,459,470 | + | C2H9g12865 | CX9g057421 | LOC_Os09g31170 | Os09g0485800 | - | Detail |
| C1H9g09571 | 9:15,459,801-15,461,525 | - | C2H9g08271 | CX9g056446 | LOC_Os09g31180 | Os09g0485900 | - | Detail |
| C1H9g07652 | 9:15,461,954-15,462,514 | + | C2H9g15653 | - | LOC_Os09g31190 | Os09g0486000 | - | Detail |
| C1H9g10100 | 9:15,467,286-15,467,780 | + | C2H9g10052 | CX9g058060 | LOC_Os09g31200 | Os09g0486500 | SAP1, Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1 | Detail |
| C1H9g04466 | 9:15,478,347-15,479,720 | + | C2H9g09908 | CX9g056228 | LOC_Os09g31210 | Os09g0486700 | OsAGC18 | Detail |
| C1H9g26143 | 9:15,487,243-15,492,467 | - | C2H9g06324 | CX9g057251 | LOC_Os09g31230 | Os09g0487200 | - | Detail |
| C1H9g26058 | 9:15,500,570-15,500,923 | - | C2H8g28041 | CX9g055951 | LOC_Os09g31260 | Os09g0487500 | - | Detail |
| C1H9g29280 | 9:15,501,853-15,504,293 | - | C2H9g10558 | CX9g058148 | LOC_Os09g31270 | Os09g0487600 | - | Detail |
| C1H9g01267 | 9:15,507,404-15,510,950 | + | C2H9g06481 | CX9g055842 | LOC_Os09g31280 | Os09g0487700 | - | Detail |
| C1H9g18482 | 9:15,516,863-15,517,405 | + | C2H9g17245 | CX9g055017 | LOC_Os09g31300 | Os09g0487900 | OsbHLH130 | Detail |
| C1H9g06099 | 9:15,517,524-15,518,950 | + | C2H9g27532 | CX9g055017 | LOC_Os09g31300 | Os09g0487900 | OsbHLH130 | Detail |
| C1H9g24450 | 9:15,527,398-15,527,895 | - | - | CX9g056925 | LOC_Os09g31310 | Os09g0488000 | OsGNA1 | Detail |
| C1H9g04944 | 9:15,542,267-15,544,409 | + | C2H9g14003 | CX9g057197 | LOC_Os09g31350 | Os09g0488600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28411 | 3:9,240,532-9,246,895 | - | C1H3g23179 | CX3g027965 | LOC_Os03g18710 | Os03g0298700 | - | Detail |
| C2H3g22544 | 3:9,248,494-9,252,558 | - | C1H3g30107 | CX3g028856 | LOC_Os03g18720 | Os03g0298800 | - | Detail |
| C2H3g15045 | 3:9,264,581-9,265,768 | + | C1H3g08723 | CX3g029271 | LOC_Os03g18740 | Os03g0299200 | - | Detail |
| C2H3g09178 | 3:9,278,981-9,279,901 | - | C1H3g20574 | CX3g025577 | LOC_Os03g18770 | Os03g0299600 | - | Detail |
| C2H3g30408 | 3:9,288,260-9,293,108 | - | C1H3g08338 | CX3g025927 | LOC_Os03g18790 | Os03g0299800 | - | Detail |
| C2H3g01680 | 3:9,300,538-9,303,854 | + | C1H3g29390 | CX3g025303 | LOC_Os03g18810 | Os03g0299900 | - | Detail |
| C2H3g29698 | 3:9,305,262-9,306,608 | - | C1H3g08396 | CX3g025517 | LOC_Os03g18820 | Os03g0300000 | - | Detail |
| C2H3g28163 | 3:9,309,510-9,313,862 | - | C1H3g18508 | CX3g030992 | LOC_Os03g18830 | Os03g0300200 | - | Detail |
| C2H3g21841 | 3:9,313,891-9,319,684 | + | C1H3g23407 | CX3g030790 | LOC_Os03g18840 | Os03g0300300 | - | Detail |
| C2H3g29151 | 3:9,320,346-9,321,399 | + | C1H3g17735 | CX3g027983 | LOC_Os03g18850 | Os03g0300400 | JIOsPR10 | Detail |
| C2H3g16892 | 3:9,323,452-9,325,149 | - | C1H3g06825 | CX3g030884 | LOC_Os03g18860 | Os03g0300500 | - | Detail |
| C2H3g14772 | 3:9,328,774-9,329,751 | - | C1H3g14250 | CX3g030255 | LOC_Os03g18870 | Os03g0300600 | - | Detail |
| C2H3g30255 | 3:9,332,917-9,334,022 | - | C1H3g00200 | CX3g030501 | LOC_Os03g18880 | Os03g0300700 | - | Detail |
| C2H3g17031 | 3:9,339,566-9,341,275 | + | C1H3g08826 | CX3g028981 | LOC_Os03g18890 | Os03g0300900 | - | Detail |
| C2H3g21070 | 3:9,358,176-9,360,191 | + | C1H3g12713 | CX3g030388 | LOC_Os03g18910 | Os03g0301200 | - | Detail |
| C2H3g13460 | 3:9,365,870-9,371,894 | + | C1H3g28323 | CX3g027587 | LOC_Os03g18940 | Os03g0301400 | - | Detail |
| C2H3g01957 | 3:9,374,145-9,376,152 | + | C1H3g10793 | CX3g029287 | LOC_Os03g18950 | Os03g0301500 | - | Detail |
| C2H3g01576 | 3:9,378,347-9,381,434 | + | C1H3g07825 | CX3g028454 | LOC_Os03g18960 | Os03g0301600 | - | Detail |
| C2H3g21248 | 3:9,382,284-9,385,967 | - | C1H3g28727 | CX3g025125 | LOC_Os03g18970 | Os03g0301700 | - | Detail |
| C2H3g22040 | 3:9,391,479-9,397,574 | - | C1H3g15707 | CX3g025499 | LOC_Os03g18980 | Os03g0301800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |