| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g22239 | 9:15,387,857-15,388,476 | + | - | CX9g056123 | - | - | - | Detail |
| C1H9g10463 | 9:15,390,930-15,396,579 | - | C2H9g25938 | CX9g055724 | LOC_Os09g31090 | Os09g0484300 | - | Detail |
| C1H9g25991 | 9:15,404,902-15,405,309 | + | - | CX9g056981 | LOC_Os09g31100 | - | - | Detail |
| C1H9g21053 | 9:15,411,915-15,412,343 | + | C2H9g09529 | CX9g056137 | LOC_Os09g31120 | Os09g0484800 | - | Detail |
| C1H9g25716 | 9:15,412,962-15,413,769 | + | C2H9g09529 | CX9g056137 | LOC_Os09g31120 | Os09g0484800 | - | Detail |
| C1H9g21552 | 9:15,420,705-15,423,279 | + | C2H9g06729 | CX9g055844 | LOC_Os09g31130 | Os09g0484900 | - | Detail |
| C1H9g28280 | 9:15,445,388-15,450,064 | + | C2H9g05554 | CX9g057232 | LOC_Os09g31140 | Os09g0485600 | - | Detail |
| C1H9g16686 | 9:15,458,593-15,459,470 | + | C2H9g12865 | CX9g057421 | LOC_Os09g31170 | Os09g0485800 | - | Detail |
| C1H9g09571 | 9:15,459,801-15,461,525 | - | C2H9g08271 | CX9g056446 | LOC_Os09g31180 | Os09g0485900 | - | Detail |
| C1H9g07652 | 9:15,461,954-15,462,514 | + | C2H9g15653 | - | LOC_Os09g31190 | Os09g0486000 | - | Detail |
| C1H9g10100 | 9:15,467,286-15,467,780 | + | C2H9g10052 | CX9g058060 | LOC_Os09g31200 | Os09g0486500 | SAP1, Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1 | Detail |
| C1H9g04466 | 9:15,478,347-15,479,720 | + | C2H9g09908 | CX9g056228 | LOC_Os09g31210 | Os09g0486700 | OsAGC18 | Detail |
| C1H9g26143 | 9:15,487,243-15,492,467 | - | C2H9g06324 | CX9g057251 | LOC_Os09g31230 | Os09g0487200 | - | Detail |
| C1H9g26058 | 9:15,500,570-15,500,923 | - | C2H8g28041 | CX9g055951 | LOC_Os09g31260 | Os09g0487500 | - | Detail |
| C1H9g29280 | 9:15,501,853-15,504,293 | - | C2H9g10558 | CX9g058148 | LOC_Os09g31270 | Os09g0487600 | - | Detail |
| C1H9g01267 | 9:15,507,404-15,510,950 | + | C2H9g06481 | CX9g055842 | LOC_Os09g31280 | Os09g0487700 | - | Detail |
| C1H9g18482 | 9:15,516,863-15,517,405 | + | C2H9g17245 | CX9g055017 | LOC_Os09g31300 | Os09g0487900 | OsbHLH130 | Detail |
| C1H9g06099 | 9:15,517,524-15,518,950 | + | C2H9g27532 | CX9g055017 | LOC_Os09g31300 | Os09g0487900 | OsbHLH130 | Detail |
| C1H9g24450 | 9:15,527,398-15,527,895 | - | - | CX9g056925 | LOC_Os09g31310 | Os09g0488000 | OsGNA1 | Detail |
| C1H9g04944 | 9:15,542,267-15,544,409 | + | C2H9g14003 | CX9g057197 | LOC_Os09g31350 | Os09g0488600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07018 | 3:4,064,168-4,067,247 | - | C1H3g25212 | CX3g030934 | LOC_Os03g09020 | Os03g0189600 | - | Detail |
| C2H3g15705 | 3:4,076,995-4,077,741 | + | C1H3g17759 | CX3g030414 | LOC_Os03g09045 | Os03g0190000 | - | Detail |
| C2H3g04200 | 3:4,079,357-4,082,330 | - | C1H3g10345 | CX3g029542 | LOC_Os03g09060 | Os03g0190100 | - | Detail |
| C2H3g20959 | 3:4,084,964-4,088,393 | - | C1H3g09287 | CX3g031332 | LOC_Os03g09070 | Os03g0190300 | - | Detail |
| C2H3g15387 | 3:4,095,573-4,099,565 | - | C1H3g05709 | CX3g031087 | LOC_Os03g09080 | Os03g0190800 | - | Detail |
| C2H3g01761 | 3:4,101,326-4,104,401 | - | C1H3g10832 | CX3g028138 | LOC_Os03g09090 | Os03g0190900 | - | Detail |
| C2H3g07809 | 3:4,106,752-4,114,670 | - | C1H3g14873 | CX3g029059 | LOC_Os03g09100 | Os03g0191000 | SCT1 | Detail |
| C2H3g15678 | 3:4,117,966-4,121,511 | - | C1H3g14873 | CX3g025401 | LOC_Os03g09110 | Os03g0191100 | - | Detail |
| C2H3g21550 | 3:4,126,940-4,128,168 | - | C1H3g14671 | CX3g026471 | LOC_Os03g09120 | Os03g0191200 | - | Detail |
| C2H3g28466 | 3:4,139,871-4,142,219 | + | C1H3g14495 | CX3g028388 | LOC_Os03g09140 | Os03g0191400 | OsRab6B2, OsRab6a | Detail |
| C2H3g00905 | 3:4,144,938-4,148,814 | - | C1H3g25069 | CX3g027338 | LOC_Os03g09150 | Os03g0191700 | - | Detail |
| C2H3g19135 | 3:4,151,128-4,151,937 | + | C1H3g30469 | CX3g029377 | LOC_Os03g09160 | Os03g0191800 | - | Detail |
| C2H3g16037 | 3:4,157,728-4,158,624 | - | C1H3g18769 | CX3g028606 | LOC_Os03g09170 | Os03g0191900 | - | Detail |
| C2H3g14345 | 3:4,163,160-4,166,595 | - | C1H3g13867 | CX3g025223 | LOC_Os03g09180 | Os03g0192000 | - | Detail |
| C2H3g00220 | 3:4,167,033-4,169,737 | + | C1H3g13109 | CX3g026535 | LOC_Os03g09190 | Os03g0192100 | - | Detail |
| C2H3g04064 | 3:4,169,895-4,172,790 | - | C1H3g24183 | CX3g029681 | LOC_Os03g09200 | Os03g0192300 | - | Detail |
| C2H3g23777 | 3:4,183,683-4,186,314 | - | C1H3g22125 | CX3g026243 | LOC_Os03g09210 | Os03g0192400 | - | Detail |
| C2H3g14962 | 3:4,191,655-4,196,800 | + | C1H3g21423 | CX3g025389 | LOC_Os03g09220 | Os03g0192500 | PP45, OsPP45, BIPP2C1 | Detail |
| C2H3g01547 | 3:4,197,442-4,198,720 | - | C1H3g29007 | CX3g029005 | LOC_Os03g09230 | Os03g0192600 | - | Detail |
| C2H3g00630 | 3:4,201,731-4,206,113 | - | C1H3g26414 | CX3g028884 | LOC_Os03g09250 | Os03g0192700 | INO1, RINO1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |