| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g27923 | 9:15,029,951-15,035,490 | - | C2H9g27822 | CX9g056334 | LOC_Os09g29950 | Os09g0475700 | - | Detail |
| C1H9g00265 | 9:15,040,582-15,041,298 | + | C2H9g12601 | CX9g057058 | LOC_Os09g29960 | Os09g0475800 | DOF25, OsDof25 | Detail |
| C1H9g12104 | 9:15,044,807-15,047,542 | + | C2H9g30507 | CX9g055881 | LOC_Os09g29970 | Os09g0476000 | - | Detail |
| C1H9g14198 | 9:15,050,551-15,052,362 | - | C2H9g05705 | CX9g055475 | LOC_Os09g29980 | Os09g0476100 | - | Detail |
| C1H9g23786 | 9:15,054,975-15,055,739 | + | - | - | LOC_Os09g29990 | - | - | Detail |
| C1H9g25617 | 9:15,065,625-15,066,449 | + | C2H9g27195 | CX9g056851 | LOC_Os09g30010 | Os09g0476800 | - | Detail |
| C1H9g04930 | 9:15,068,563-15,068,793 | + | - | - | LOC_Os09g30030 | Os09g0477100 | - | Detail |
| C1H9g24996 | 9:15,077,581-15,084,190 | + | C2H9g27075 | CX9g057877 | LOC_Os09g30070 | Os09g0477700 | - | Detail |
| C1H9g04718 | 9:15,089,007-15,096,142 | + | C2H9g00982 | CX9g058034 | LOC_Os09g30100 | Os09g0477900 | - | Detail |
| C1H9g02764 | 9:15,097,158-15,101,555 | - | C2H9g06312 | CX9g057896 | LOC_Os09g30105 | Os09g0478000 | - | Detail |
| C1H9g04101 | 9:15,102,055-15,107,002 | - | C2H9g23645 | CX9g056162 | LOC_Os09g30120 | Os09g0478100 | - | Detail |
| C1H9g22612 | 9:15,108,105-15,113,899 | - | C2H9g06312 | CX9g057896 | LOC_Os09g30130 | Os09g0478300 | OsCSLE6 | Detail |
| C1H9g19035 | 9:15,122,423-15,123,971 | - | C2H9g29803 | CX9g057032 | LOC_Os09g30140 | Os09g0478400 | - | Detail |
| C1H9g12687 | 9:15,129,220-15,132,539 | + | C2H9g04959 | CX9g057709 | LOC_Os09g30150 | Os09g0478500 | OsAGC17 | Detail |
| C1H9g25032 | 9:15,139,244-15,139,729 | - | C2H9g05399 | CX9g056454 | LOC_Os09g30160 | Os09g0478600 | OsRF1 | Detail |
| C1H9g29116 | 9:15,145,531-15,148,684 | + | C2H9g08126 | CX9g056410 | LOC_Os09g30170 | Os09g0479000 | - | Detail |
| C1H9g16527 | 9:15,149,392-15,152,248 | + | C2H9g08126 | CX9g056410 | LOC_Os09g30180 | Os09g0479100 | - | Detail |
| C1H9g00099 | 9:15,160,274-15,164,045 | + | C2H9g01571 | CX9g056788 | LOC_Os09g30190 | Os09g0479200 | - | Detail |
| C1H9g15451 | 9:15,166,116-15,169,095 | + | C2H9g13410 | CX9g056798 | LOC_Os09g30200 | Os09g0479300 | - | Detail |
| C1H9g03732 | 9:15,171,842-15,176,697 | + | C2H9g09775 | CX9g057374 | LOC_Os09g30210 | Os09g0479400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g16716 | 4:29,196,574-29,202,704 | + | C1H4g13098 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C2H4g14267 | 4:29,203,420-29,205,381 | - | C1H4g29894 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C2H4g26679 | 4:29,222,202-29,228,139 | + | C1H4g08308 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C2H4g19453 | 4:29,231,603-29,237,104 | - | C1H4g00285 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C2H4g17808 | 4:29,238,059-29,238,391 | - | C1H5g05278 | CX4g031937 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| C2H4g23478 | 4:29,239,673-29,239,927 | + | C1H4g10605 | CX4g034501 | - | - | - | Detail |
| C2H4g29870 | 4:29,239,978-29,243,354 | + | C1H4g18316 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C2H4g27682 | 4:29,244,197-29,245,269 | - | C1H4g08413 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C2H4g25028 | 4:29,253,233-29,260,212 | - | C1H4g06808 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C2H4g24912 | 4:29,262,184-29,262,843 | + | - | CX4g036037 | LOC_Os04g56820 | - | - | Detail |
| C2H4g18884 | 4:29,265,411-29,265,767 | + | - | CX4g035877 | - | - | - | Detail |
| C2H4g26604 | 4:29,266,394-29,267,548 | - | - | - | - | - | - | Detail |
| C2H4g20102 | 4:29,268,657-29,274,641 | - | C1H4g18422 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C2H4g00899 | 4:29,296,008-29,297,348 | + | C1H4g27904 | CX4g034957 | LOC_Os04g56900 | Os04g0664500 | OsAHT1 | Detail |
| C2H4g19479 | 4:29,299,350-29,300,699 | - | C1H4g27904 | CX4g035701 | LOC_Os04g56910 | Os04g0664600 | OsAHT2 | Detail |
| C2H4g29529 | 4:29,307,857-29,308,045 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g12473 | 4:29,308,394-29,310,189 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g26922 | 4:29,310,977-29,313,340 | - | C1H4g05011 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| C2H4g09681 | 4:29,314,042-29,316,157 | + | C1H4g08334 | CX4g034395 | - | Os04g0665000 | - | Detail |
| C2H4g19734 | 4:29,317,030-29,318,991 | - | C1H4g02808 | CX4g035345 | LOC_Os04g56950 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |