| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g27923 | 9:15,029,951-15,035,490 | - | C2H9g27822 | CX9g056334 | LOC_Os09g29950 | Os09g0475700 | - | Detail |
| C1H9g00265 | 9:15,040,582-15,041,298 | + | C2H9g12601 | CX9g057058 | LOC_Os09g29960 | Os09g0475800 | DOF25, OsDof25 | Detail |
| C1H9g12104 | 9:15,044,807-15,047,542 | + | C2H9g30507 | CX9g055881 | LOC_Os09g29970 | Os09g0476000 | - | Detail |
| C1H9g14198 | 9:15,050,551-15,052,362 | - | C2H9g05705 | CX9g055475 | LOC_Os09g29980 | Os09g0476100 | - | Detail |
| C1H9g23786 | 9:15,054,975-15,055,739 | + | - | - | LOC_Os09g29990 | - | - | Detail |
| C1H9g25617 | 9:15,065,625-15,066,449 | + | C2H9g27195 | CX9g056851 | LOC_Os09g30010 | Os09g0476800 | - | Detail |
| C1H9g04930 | 9:15,068,563-15,068,793 | + | - | - | LOC_Os09g30030 | Os09g0477100 | - | Detail |
| C1H9g24996 | 9:15,077,581-15,084,190 | + | C2H9g27075 | CX9g057877 | LOC_Os09g30070 | Os09g0477700 | - | Detail |
| C1H9g04718 | 9:15,089,007-15,096,142 | + | C2H9g00982 | CX9g058034 | LOC_Os09g30100 | Os09g0477900 | - | Detail |
| C1H9g02764 | 9:15,097,158-15,101,555 | - | C2H9g06312 | CX9g057896 | LOC_Os09g30105 | Os09g0478000 | - | Detail |
| C1H9g04101 | 9:15,102,055-15,107,002 | - | C2H9g23645 | CX9g056162 | LOC_Os09g30120 | Os09g0478100 | - | Detail |
| C1H9g22612 | 9:15,108,105-15,113,899 | - | C2H9g06312 | CX9g057896 | LOC_Os09g30130 | Os09g0478300 | OsCSLE6 | Detail |
| C1H9g19035 | 9:15,122,423-15,123,971 | - | C2H9g29803 | CX9g057032 | LOC_Os09g30140 | Os09g0478400 | - | Detail |
| C1H9g12687 | 9:15,129,220-15,132,539 | + | C2H9g04959 | CX9g057709 | LOC_Os09g30150 | Os09g0478500 | OsAGC17 | Detail |
| C1H9g25032 | 9:15,139,244-15,139,729 | - | C2H9g05399 | CX9g056454 | LOC_Os09g30160 | Os09g0478600 | OsRF1 | Detail |
| C1H9g29116 | 9:15,145,531-15,148,684 | + | C2H9g08126 | CX9g056410 | LOC_Os09g30170 | Os09g0479000 | - | Detail |
| C1H9g16527 | 9:15,149,392-15,152,248 | + | C2H9g08126 | CX9g056410 | LOC_Os09g30180 | Os09g0479100 | - | Detail |
| C1H9g00099 | 9:15,160,274-15,164,045 | + | C2H9g01571 | CX9g056788 | LOC_Os09g30190 | Os09g0479200 | - | Detail |
| C1H9g15451 | 9:15,166,116-15,169,095 | + | C2H9g13410 | CX9g056798 | LOC_Os09g30200 | Os09g0479300 | - | Detail |
| C1H9g03732 | 9:15,171,842-15,176,697 | + | C2H9g09775 | CX9g057374 | LOC_Os09g30210 | Os09g0479400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g18815 | 2:22,964,531-22,973,156 | - | C1H2g02429 | CX2g019377 | LOC_Os02g40460 | Os02g0617700 | - | Detail |
| C2H2g29974 | 2:22,984,697-22,984,957 | - | - | - | - | - | - | Detail |
| C2H2g26929 | 2:22,988,593-22,990,462 | + | C1H2g22582 | - | LOC_Os02g40490 | - | - | Detail |
| C2H2g04756 | 2:22,994,675-22,996,352 | + | C1H2g02238 | CX2g024840 | LOC_Os02g40500 | Os02g0618100 | OsGRX9, OsGrx_C2.1 | Detail |
| C2H2g05107 | 2:22,997,619-23,000,421 | + | C1H2g04978 | CX2g024264 | LOC_Os02g40510 | Os02g0618200 | OsPRR1, OsTOC1, OsPRR1/OsTOC1 | Detail |
| C2H2g25708 | 2:23,002,033-23,003,523 | - | C1H2g16546 | - | LOC_Os02g40514 | Os02g0618250 | - | Detail |
| C2H2g01262 | 2:23,008,365-23,009,939 | - | C1H2g01139 | CX2g019264 | LOC_Os02g40530 | Os02g0618400 | OsMPS | Detail |
| C2H2g01838 | 2:23,025,294-23,026,795 | + | C1H2g19268 | CX2g024894 | LOC_Os02g40550 | Os02g0618700 | - | Detail |
| C2H2g30582 | 2:23,043,425-23,044,159 | - | - | - | LOC_Os02g40600 | - | - | Detail |
| C2H2g02169 | 2:23,070,406-23,075,582 | - | C1H2g16057 | CX2g023988 | LOC_Os02g40664 | Os02g0619600 | - | Detail |
| C2H2g26987 | 2:23,075,966-23,077,800 | + | C1H2g04094 | - | - | - | - | Detail |
| C2H2g19869 | 2:23,080,364-23,080,630 | - | - | - | - | - | - | Detail |
| C2H2g18142 | 2:23,088,767-23,092,303 | + | C1H2g31349 | CX2g019895 | LOC_Os02g40680 | Os02g0620100 | - | Detail |
| C2H2g10513 | 2:23,093,099-23,093,482 | + | C1H2g31349 | CX2g020219 | LOC_Os02g40690 | Os02g0620200 | - | Detail |
| C2H2g22522 | 2:23,099,083-23,099,503 | + | C1H2g24265 | CX2g023588 | LOC_Os02g40700 | Os02g0620400 | - | Detail |
| C2H2g07540 | 2:23,105,722-23,107,218 | + | C1H2g23096 | CX2g024155 | LOC_Os02g40710 | Os02g0620500 | OsAMT1;3 | Detail |
| C2H2g29061 | 2:23,111,389-23,115,393 | + | C1H2g17359 | CX2g024932 | LOC_Os02g40730 | Os02g0620600 | AMT1;2, OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1, 3", OsAMT1;3, OsAMT1.3, OsAMT1.2 | Detail |
| C2H2g23641 | 2:23,118,462-23,120,057 | - | C1H2g17305 | CX2g024918 | LOC_Os02g40750 | Os02g0769900 | - | Detail |
| C2H2g07915 | 2:23,128,520-23,133,173 | - | - | - | - | - | - | Detail |
| C2H2g25432 | 2:23,136,851-23,144,033 | + | C1H2g09682 | CX2g022252 | LOC_Os02g40770 | Os02g0621100 | SDG712 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |