| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g31584 | 9:14,397,174-14,398,148 | - | C2H9g05249 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C1H9g31193 | 9:14,398,159-14,399,079 | - | C2H9g03017 | - | - | Os09g0462301 | - | Detail |
| C1H9g18452 | 9:14,402,609-14,405,130 | + | C2H9g27701 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C1H9g29610 | 9:14,407,442-14,407,735 | + | C2H9g19629 | CX9g056435 | LOC_Os09g28780 | Os08g0475500 | OsCEP6, OsCEP6.1 | Detail |
| C1H9g28013 | 9:14,417,767-14,421,876 | + | C2H9g05705 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C1H9g15723 | 9:14,423,139-14,423,470 | + | C2H9g21321 | - | - | Os09g0462850 | - | Detail |
| C1H9g15089 | 9:14,425,555-14,428,291 | - | C2H9g19364 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C1H9g24460 | 9:14,431,895-14,435,261 | - | C2H9g06754 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C1H9g16758 | 9:14,443,505-14,446,049 | - | C2H9g26932 | - | - | - | - | Detail |
| C1H9g08405 | 9:14,445,917-14,450,400 | + | C2H9g17616 | CX9g055989 | LOC_Os09g28850 | Os09g0463300 | - | Detail |
| C1H9g27922 | 9:14,462,626-14,463,366 | + | C2H8g04634 | CX8g053678 | LOC_Os09g28880 | Os09g0463600 | - | Detail |
| C1H9g22383 | 9:14,469,635-14,470,756 | + | - | CX8g050532 | LOC_Os09g28890 | Os09g0463700 | - | Detail |
| C1H9g29908 | 9:14,477,978-14,478,205 | + | C2H9g06208 | CX9g058102 | LOC_Os09g28900 | Os09g0463900 | - | Detail |
| C1H9g13495 | 9:14,479,436-14,479,918 | + | C2H9g06208 | CX9g055813 | LOC_Os09g28900 | Os09g0410700 | - | Detail |
| C1H9g11908 | 9:14,481,560-14,486,123 | - | C2H9g27359 | CX9g057340 | LOC_Os09g28910 | Os09g0464000 | - | Detail |
| C1H9g03015 | 9:14,485,149-14,486,023 | + | - | - | - | Os09g0464066 | - | Detail |
| C1H9g26305 | 9:14,498,312-14,499,307 | - | C2H9g21979 | CX9g056952 | LOC_Os09g28930 | Os09g0464300 | - | Detail |
| C1H9g02656 | 9:14,510,601-14,518,761 | - | C2H9g10275 | CX9g056356 | LOC_Os09g28940 | Os09g0464400 | - | Detail |
| C1H9g11367 | 9:14,531,631-14,532,587 | - | C2H9g26296 | CX9g057742 | LOC_Os09g29050 | Os09g0465400 | - | Detail |
| C1H9g04483 | 9:14,534,358-14,537,056 | + | C2H9g25155 | CX9g057144 | LOC_Os09g29060 | Os09g0465500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02060 | 3:485,335-491,499 | - | C1H3g02926 | CX3g026446 | LOC_Os03g02030 | Os03g0111100 | - | Detail |
| C2H3g10416 | 3:492,780-495,271 | - | C1H3g26294 | CX3g031029 | LOC_Os03g02040 | Os03g0111200 | - | Detail |
| C2H3g28715 | 3:498,296-498,589 | - | C1H3g15608 | CX3g030230 | LOC_Os03g02050 | Os03g0111300 | - | Detail |
| C2H3g08607 | 3:504,319-505,372 | - | C1H3g30842 | CX3g026627 | LOC_Os03g02070 | Os03g0111400 | - | Detail |
| C2H3g00134 | 3:508,909-517,722 | + | C1H3g29372 | CX3g029050 | LOC_Os03g02100 | Os03g0694900 | - | Detail |
| C2H3g12317 | 3:518,627-525,581 | + | C1H3g12244 | CX3g028048 | LOC_Os03g02110 | Os03g0111800 | - | Detail |
| C2H3g29148 | 3:528,162-538,899 | + | C1H3g07282 | CX3g026996 | LOC_Os03g02150 | Os03g0112101 | - | Detail |
| C2H3g00838 | 3:541,524-550,028 | + | C1H3g30522 | CX3g029929 | LOC_Os03g02160 | Os03g0112700 | EHD4, OsC3H20, C3H20, Ehd4 | Detail |
| C2H3g27881 | 3:550,776-555,023 | - | C1H3g07238 | CX3g030050 | LOC_Os03g02170 | Os03g0112800 | STS1 | Detail |
| C2H3g26177 | 3:555,421-557,266 | - | C1H3g09620 | CX3g030634 | LOC_Os03g02180 | Os03g0112900 | OsF5HL2 | Detail |
| C2H3g13014 | 3:562,004-563,679 | - | C1H3g14295 | CX3g025559 | LOC_Os03g02190 | Os03g0113000 | - | Detail |
| C2H3g22975 | 3:566,114-569,005 | + | C1H3g06676 | CX3g028290 | LOC_Os03g02200 | Os03g0113100 | - | Detail |
| C2H3g07317 | 3:570,078-572,543 | + | C1H3g29988 | CX3g026697 | LOC_Os03g02210 | Os03g0113200 | - | Detail |
| C2H3g26703 | 3:581,466-585,763 | - | C1H3g08654 | CX3g028541 | LOC_Os03g02240 | - | - | Detail |
| C2H3g21122 | 3:596,680-601,118 | - | C1H3g00977 | CX3g027292 | LOC_Os03g02260 | Os03g0113700 | - | Detail |
| C2H3g16661 | 3:601,432-606,865 | + | C1H3g24927 | CX3g030810 | LOC_Os03g02270 | Os03g0113800 | - | Detail |
| C2H3g07262 | 3:612,061-612,657 | + | C1H3g15339 | CX3g028218 | LOC_Os03g02280 | Os03g0113900 | OsS40-4 | Detail |
| C2H3g09613 | 3:616,392-622,786 | + | C1H3g18554 | CX3g027517 | LOC_Os03g02290 | Os03g0114000 | - | Detail |
| C2H3g23619 | 3:623,865-624,590 | + | C1H3g18461 | CX3g025737 | LOC_Os03g02300 | Os03g0114100 | - | Detail |
| C2H3g25616 | 3:625,873-627,438 | - | C1H3g30974 | CX3g030259 | LOC_Os03g02310 | Os03g0114200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |