| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g31584 | 9:14,397,174-14,398,148 | - | C2H9g05249 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C1H9g31193 | 9:14,398,159-14,399,079 | - | C2H9g03017 | - | - | Os09g0462301 | - | Detail |
| C1H9g18452 | 9:14,402,609-14,405,130 | + | C2H9g27701 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C1H9g29610 | 9:14,407,442-14,407,735 | + | C2H9g19629 | CX9g056435 | LOC_Os09g28780 | Os08g0475500 | OsCEP6, OsCEP6.1 | Detail |
| C1H9g28013 | 9:14,417,767-14,421,876 | + | C2H9g05705 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C1H9g15723 | 9:14,423,139-14,423,470 | + | C2H9g21321 | - | - | Os09g0462850 | - | Detail |
| C1H9g15089 | 9:14,425,555-14,428,291 | - | C2H9g19364 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C1H9g24460 | 9:14,431,895-14,435,261 | - | C2H9g06754 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C1H9g16758 | 9:14,443,505-14,446,049 | - | C2H9g26932 | - | - | - | - | Detail |
| C1H9g08405 | 9:14,445,917-14,450,400 | + | C2H9g17616 | CX9g055989 | LOC_Os09g28850 | Os09g0463300 | - | Detail |
| C1H9g27922 | 9:14,462,626-14,463,366 | + | C2H8g04634 | CX8g053678 | LOC_Os09g28880 | Os09g0463600 | - | Detail |
| C1H9g22383 | 9:14,469,635-14,470,756 | + | - | CX8g050532 | LOC_Os09g28890 | Os09g0463700 | - | Detail |
| C1H9g29908 | 9:14,477,978-14,478,205 | + | C2H9g06208 | CX9g058102 | LOC_Os09g28900 | Os09g0463900 | - | Detail |
| C1H9g13495 | 9:14,479,436-14,479,918 | + | C2H9g06208 | CX9g055813 | LOC_Os09g28900 | Os09g0410700 | - | Detail |
| C1H9g11908 | 9:14,481,560-14,486,123 | - | C2H9g27359 | CX9g057340 | LOC_Os09g28910 | Os09g0464000 | - | Detail |
| C1H9g03015 | 9:14,485,149-14,486,023 | + | - | - | - | Os09g0464066 | - | Detail |
| C1H9g26305 | 9:14,498,312-14,499,307 | - | C2H9g21979 | CX9g056952 | LOC_Os09g28930 | Os09g0464300 | - | Detail |
| C1H9g02656 | 9:14,510,601-14,518,761 | - | C2H9g10275 | CX9g056356 | LOC_Os09g28940 | Os09g0464400 | - | Detail |
| C1H9g11367 | 9:14,531,631-14,532,587 | - | C2H9g26296 | CX9g057742 | LOC_Os09g29050 | Os09g0465400 | - | Detail |
| C1H9g04483 | 9:14,534,358-14,537,056 | + | C2H9g25155 | CX9g057144 | LOC_Os09g29060 | Os09g0465500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g29760 | 1:30,320,561-30,324,216 | + | C1H1g21118 | CX1g003536 | LOC_Os01g59150 | Os01g0805900 | Ostub16, OsTUB4 | Detail |
| C2H1g23296 | 1:30,325,529-30,329,004 | - | C1H1g01747 | CX1g005787 | LOC_Os01g59160 | Os01g0806000 | - | Detail |
| C2H1g17900 | 1:30,331,189-30,335,075 | - | C1H1g27652 | CX1g001223 | LOC_Os01g59180 | Os01g0806200 | - | Detail |
| C2H1g24895 | 1:30,344,478-30,345,296 | + | C1H1g03002 | CX1g005984 | LOC_Os01g59200 | Os01g0806400 | - | Detail |
| C2H1g26128 | 1:30,351,071-30,353,359 | + | C1H1g04816 | - | - | - | - | Detail |
| C2H1g23457 | 1:30,382,660-30,384,608 | - | C1H1g20078 | CX1g003314 | LOC_Os01g59320 | - | - | Detail |
| C2H1g05117 | 1:30,384,278-30,394,996 | + | C1H1g24133 | CX1g004494 | LOC_Os01g59340 | Os01g0807900 | - | Detail |
| C2H1g04858 | 1:30,396,706-30,402,811 | - | C1H1g17602 | CX1g003387 | LOC_Os01g59350 | Os01g0808100 | OsTGA2 | Detail |
| C2H1g19585 | 1:30,402,678-30,403,697 | + | - | - | - | - | - | Detail |
| C2H1g17898 | 1:30,410,772-30,413,039 | + | C1H1g29312 | CX1g004253 | LOC_Os01g59360 | Os01g0808400 | OsCPK2 | Detail |
| C2H1g23554 | 1:30,446,453-30,450,487 | + | C1H1g29168 | CX1g000100 | LOC_Os01g59440 | Os01g0809300 | LRR1, OsLRR1 | Detail |
| C2H1g09879 | 1:30,454,769-30,456,622 | + | C1H1g14629 | CX1g001964 | LOC_Os01g59470 | - | - | Detail |
| C2H1g15165 | 1:30,457,871-30,458,933 | + | C1H1g04269 | CX1g003076 | LOC_Os01g59480 | Os01g0812600 | - | Detail |
| C2H1g27115 | 1:30,460,182-30,465,285 | + | C1H1g08327 | CX1g004356 | LOC_Os01g59490 | Os01g0809900 | - | Detail |
| C2H1g13365 | 1:30,463,619-30,466,080 | - | C1H1g01557 | CX1g002424 | LOC_Os01g59500 | Os01g0810000 | - | Detail |
| C2H1g08587 | 1:30,466,549-30,470,735 | - | C1H1g20345 | CX1g006451 | LOC_Os01g59510 | Os01g0810100 | - | Detail |
| C2H1g08159 | 1:30,471,027-30,477,151 | + | C1H1g31825 | CX1g000157 | LOC_Os01g59520 | Os01g0810200 | - | Detail |
| C2H1g16979 | 1:30,477,344-30,477,779 | - | - | - | - | - | - | Detail |
| C2H1g22778 | 1:30,480,209-30,484,968 | - | C1H1g13792 | CX1g001838 | LOC_Os01g59550 | Os01g0810500 | - | Detail |
| C2H1g29196 | 1:30,486,537-30,487,338 | - | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |