| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g01031 | 9:14,259,818-14,260,375 | + | C2H9g21780 | CX9g058122 | LOC_Os09g24580 | Os09g0458700 | - | Detail |
| C1H9g23501 | 9:14,265,410-14,265,727 | + | - | CX9g055880 | LOC_Os09g28500 | Os09g0458800 | - | Detail |
| C1H9g27925 | 9:14,271,724-14,272,020 | + | - | CX9g057359 | LOC_Os09g28510 | Os09g0458900 | - | Detail |
| C1H9g30078 | 9:14,284,614-14,285,425 | + | C2H9g06834 | CX8g053749 | LOC_Os09g28520 | Os09g0459200 | SG1, OsSG1 | Detail |
| C1H9g30501 | 9:14,295,803-14,296,597 | - | C2H8g24284 | CX8g053292 | LOC_Os09g28550 | Os09g0459500 | - | Detail |
| C1H9g01784 | 9:14,303,871-14,308,362 | - | C2H9g17751 | CX9g056105 | LOC_Os09g28560 | Os09g0459600 | - | Detail |
| C1H9g28087 | 9:14,312,318-14,324,249 | + | C2H9g06752 | CX9g057640 | LOC_Os09g28570 | Os09g0459800 | - | Detail |
| C1H9g30852 | 9:14,324,374-14,328,346 | - | C2H9g25937 | CX9g055374 | - | - | - | Detail |
| C1H9g27185 | 9:14,325,372-14,325,692 | + | - | CX9g057488 | - | - | - | Detail |
| C1H9g15128 | 9:14,328,593-14,328,877 | - | C2H9g25937 | CX9g055374 | - | Os09g0459900 | - | Detail |
| C1H9g10045 | 9:14,336,621-14,337,228 | + | C2H8g25958 | CX9g055458 | LOC_Os09g28590 | Os09g0460000 | - | Detail |
| C1H9g20930 | 9:14,339,731-14,340,594 | + | C2H9g01353 | CX9g056394 | LOC_Os09g28600 | Os09g0460100 | - | Detail |
| C1H9g17836 | 9:14,348,465-14,358,314 | + | C2H9g17816 | CX9g055971 | LOC_Os09g28610 | Os09g0460200 | - | Detail |
| C1H9g22594 | 9:14,360,279-14,361,229 | + | C2H9g26252 | CX9g055449 | LOC_Os09g28630 | Os09g0460400 | - | Detail |
| C1H9g11334 | 9:14,362,419-14,363,357 | + | C2H9g21518 | CX9g055140 | LOC_Os09g28640 | Os09g0460500 | - | Detail |
| C1H9g08722 | 9:14,365,300-14,366,238 | + | C2H9g26252 | CX9g055140 | LOC_Os09g28650 | Os09g0460700 | - | Detail |
| C1H9g30916 | 9:14,375,244-14,376,290 | - | C2H9g05249 | CX9g055140 | LOC_Os09g28690 | Os09g0461500 | - | Detail |
| C1H9g06910 | 9:14,383,253-14,384,218 | + | C2H9g26252 | CX9g055140 | LOC_Os09g28720 | Os09g0461700 | - | Detail |
| C1H9g01019 | 9:14,385,140-14,386,243 | - | C2H9g05249 | CX9g055449 | LOC_Os09g28730 | Os09g0461900 | - | Detail |
| C1H9g16558 | 9:14,392,883-14,394,025 | + | C2H9g05249 | CX9g055140 | LOC_Os09g28740 | Os09g0462100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g13914 | 3:766,991-768,743 | + | C1H3g12831 | CX3g029190 | LOC_Os03g02600 | Os03g0117200 | - | Detail |
| C2H3g10644 | 3:770,486-771,430 | + | C1H3g08482 | CX3g030477 | LOC_Os03g02610 | Os03g0117300 | - | Detail |
| C2H3g09711 | 3:772,427-776,196 | + | C1H3g14052 | CX3g025697 | LOC_Os03g02640 | Os03g0117800 | - | Detail |
| C2H3g30074 | 3:776,701-777,315 | + | C1H3g27090 | CX3g029231 | LOC_Os03g05590 | Os03g0117900 | - | Detail |
| C2H3g15234 | 3:781,622-785,586 | + | C1H3g15880 | CX3g029442 | LOC_Os03g02660 | Os03g0118100 | - | Detail |
| C2H3g07784 | 3:787,968-790,946 | + | C1H3g16233 | CX3g026262 | LOC_Os03g02670 | Os03g0118200 | - | Detail |
| C2H3g27804 | 3:794,202-797,684 | + | C1H3g13017 | CX3g031203 | LOC_Os03g02680 | Os03g0118400 | - | Detail |
| C2H3g24680 | 3:799,546-804,409 | + | C1H3g16154 | CX3g030967 | LOC_Os03g02685 | Os03g0118600 | - | Detail |
| C2H3g19778 | 3:805,523-807,094 | + | C1H3g29819 | CX3g029478 | LOC_Os03g02700 | Os03g0118700 | - | Detail |
| C2H3g28799 | 3:807,142-807,898 | + | C1H3g15623 | CX3g029478 | LOC_Os03g02700 | Os03g0118700 | - | Detail |
| C2H3g12379 | 3:811,638-816,716 | + | C1H3g19576 | CX3g027174 | LOC_Os03g02710 | Os03g0118800 | - | Detail |
| C2H3g28095 | 3:817,918-821,033 | + | C1H3g18152 | CX3g029720 | LOC_Os03g02720 | Os03g0118900 | - | Detail |
| C2H3g05533 | 3:821,452-823,335 | - | C1H3g09297 | CX3g029588 | LOC_Os03g02730 | Os03g0119000 | - | Detail |
| C2H3g14532 | 3:824,118-828,190 | - | C1H3g07728 | CX3g029171 | LOC_Os03g02740 | Os03g0119100 | - | Detail |
| C2H3g09524 | 3:830,910-833,162 | - | C1H3g23288 | CX3g030706 | LOC_Os03g02750 | Os03g0119300 | - | Detail |
| C2H3g14318 | 3:836,263-838,050 | + | - | - | - | - | - | Detail |
| C2H3g19502 | 3:853,357-881,954 | + | C1H3g00618 | CX3g030646 | LOC_Os03g03610 | Os03g0119500 | CRR1 | Detail |
| C2H3g11241 | 3:882,716-883,975 | + | C1H3g23255 | CX3g025079 | LOC_Os03g02762 | Os03g0119700 | - | Detail |
| C2H3g05811 | 3:887,426-887,737 | + | C1H3g13459 | CX3g028433 | LOC_Os03g02780 | Os03g0119900 | - | Detail |
| C2H3g00993 | 3:896,744-900,693 | + | C1H3g04574 | CX3g026456 | LOC_Os03g02800 | Os03g0119966 | RIM1, ONAC054, ONAC54, NAC54 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |