| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g12096 | 9:13,757,118-13,758,476 | - | C2H9g27951 | CX9g056835 | LOC_Os09g27450 | Os09g0447000 | - | Detail |
| C1H9g25366 | 9:13,777,068-13,779,794 | + | C2H9g24846 | CX9g055614 | LOC_Os09g27490 | - | - | Detail |
| C1H9g31093 | 9:13,784,508-13,786,924 | - | C2H9g03009 | CX9g057770 | LOC_Os09g27500 | Os09g0447300 | - | Detail |
| C1H9g08652 | 9:13,791,293-13,793,244 | - | C2H9g15068 | CX9g054878 | LOC_Os09g27510 | Os09g0447500 | - | Detail |
| C1H9g00733 | 9:13,798,064-13,800,313 | - | C2H9g11232 | CX9g057290 | LOC_Os09g27520 | Os09g0447600 | - | Detail |
| C1H9g18103 | 9:13,803,853-13,804,824 | - | C2H9g00780 | CX9g055092 | LOC_Os09g27570 | Os09g0448100 | - | Detail |
| C1H9g10551 | 9:13,809,627-13,814,763 | + | C2H9g18939 | CX9g055809 | LOC_Os09g27580 | Os09g0448200 | - | Detail |
| C1H9g31490 | 9:13,821,656-13,823,743 | + | C2H9g17309 | CX9g055972 | LOC_Os09g27590 | Os09g0448500 | GS9 | Detail |
| C1H9g23054 | 9:13,835,890-13,839,743 | + | C2H9g13055 | CX9g056032 | LOC_Os09g27610 | Os09g0448900 | - | Detail |
| C1H9g27006 | 9:13,840,788-13,843,038 | + | C2H9g00544 | CX9g057956 | LOC_Os09g27620 | Os09g0449000 | OsMS1, PTC1 | Detail |
| C1H9g20611 | 9:13,853,460-13,854,311 | + | - | - | - | - | - | Detail |
| C1H9g01763 | 9:13,879,531-13,882,817 | + | C2H9g07425 | CX9g054902 | LOC_Os09g27650 | Os09g0449400 | IDD13 | Detail |
| C1H9g25929 | 9:13,889,865-13,891,025 | + | C2H9g06801 | CX9g058036 | LOC_Os09g27660 | Os09g0449500 | - | Detail |
| C1H9g24951 | 9:13,893,482-13,896,671 | + | C2H9g00964 | CX9g055092 | LOC_Os09g27570 | Os09g0449600 | - | Detail |
| C1H9g21509 | 9:13,905,296-13,907,396 | + | C2H9g26524 | CX9g056221 | LOC_Os09g27680 | Os09g0449800 | - | Detail |
| C1H9g08384 | 9:13,909,876-13,912,768 | + | C2H9g13669 | CX9g058164 | LOC_Os09g27690 | Os09g0450200 | - | Detail |
| C1H9g06430 | 9:13,914,220-13,919,734 | - | C2H9g25772 | CX9g057479 | LOC_Os09g27700 | Os09g0450300 | - | Detail |
| C1H9g22970 | 9:13,934,300-13,935,512 | + | C2H9g17119 | CX9g057225 | LOC_Os09g27730 | Os09g0450600 | - | Detail |
| C1H9g31330 | 9:13,937,171-13,938,277 | - | C2H9g24868 | CX9g057122 | LOC_Os09g27750 | Os09g0451000 | ACO1, OsACO1, ACO | Detail |
| C1H9g25747 | 9:13,951,309-13,952,913 | + | C2H9g13280 | CX9g055115 | LOC_Os09g27820 | Os09g0451400 | ACO2, OsACO2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g12729 | 1:33,028,778-33,029,629 | + | - | - | - | - | - | Detail |
| C2H1g08171 | 1:33,044,588-33,045,229 | + | C1H1g24698 | CX1g006898 | LOC_Os01g64620 | Os01g0866000 | - | Detail |
| C2H1g14468 | 1:33,062,097-33,065,472 | + | C1H1g21443 | CX1g006788 | LOC_Os01g64630 | Os01g0964133 | - | Detail |
| C2H1g26628 | 1:33,067,077-33,070,160 | + | C1H1g24361 | CX1g002061 | LOC_Os01g64650 | Os01g0866300 | - | Detail |
| C2H1g13692 | 1:33,071,806-33,074,738 | + | C1H1g19890 | CX1g002061 | LOC_Os01g64660 | Os01g0866400 | OscFBP1, MOC2 | Detail |
| C2H1g27654 | 1:33,074,943-33,076,275 | - | C1H1g06687 | CX1g003440 | LOC_Os01g64670 | Os01g0866500 | - | Detail |
| C2H1g02604 | 1:33,078,663-33,079,175 | - | C1H1g03251 | CX1g000969 | LOC_Os01g64680 | Os01g0866600 | - | Detail |
| C2H1g04946 | 1:33,079,993-33,081,615 | - | C1H1g20073 | CX1g003378 | LOC_Os01g64690 | Os01g0866700 | - | Detail |
| C2H1g24433 | 1:33,091,512-33,094,832 | + | C1H1g10677 | CX1g004424 | LOC_Os01g64700 | Os01g0866800 | - | Detail |
| C2H1g21915 | 1:33,098,085-33,106,160 | + | C1H1g07172 | CX1g005582 | - | Os01g0867100 | - | Detail |
| C2H1g21118 | 1:33,107,281-33,111,773 | + | C1H1g15015 | CX1g006694 | LOC_Os01g64720 | Os01g0867200 | - | Detail |
| C2H1g11092 | 1:33,112,440-33,115,002 | - | C1H1g09141 | CX1g000691 | LOC_Os01g64730 | Os01g0867300 | BZIP12, OsbZIP12, OsABF1 | Detail |
| C2H1g28759 | 1:33,119,935-33,129,326 | + | C1H1g05827 | CX1g004395 | LOC_Os01g64750 | Os01g0867600 | - | Detail |
| C2H1g15067 | 1:33,130,351-33,132,328 | + | C1H1g05655 | CX1g001594 | LOC_Os01g64760 | Os01g0867700 | - | Detail |
| C2H1g28339 | 1:33,134,001-33,137,688 | + | C1H1g18522 | CX1g006145 | LOC_Os01g64770 | Os01g0867800 | OsPTB1 | Detail |
| C2H1g30207 | 1:33,137,983-33,141,318 | - | C1H1g30751 | CX1g001130 | LOC_Os01g64780 | Os01g0867900 | - | Detail |
| C2H1g00754 | 1:33,143,439-33,145,825 | - | C1H1g06977 | CX1g003660 | LOC_Os01g64790 | Os01g0868000 | ERF99, OsEREBP2, EREBP2, OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80 | Detail |
| C2H1g16482 | 1:33,166,945-33,171,645 | - | C1H1g15696 | CX1g001548 | LOC_Os01g64810 | Os01g0868200 | - | Detail |
| C2H1g13803 | 1:33,175,093-33,185,351 | - | C1H1g06751 | CX1g000694 | LOC_Os01g64820 | Os01g0868300 | - | Detail |
| C2H1g17173 | 1:33,205,601-33,211,735 | - | C1H1g21599 | CX1g007144 | LOC_Os01g64870 | Os01g0869000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |