| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g12096 | 9:13,757,118-13,758,476 | - | C2H9g27951 | CX9g056835 | LOC_Os09g27450 | Os09g0447000 | - | Detail |
| C1H9g25366 | 9:13,777,068-13,779,794 | + | C2H9g24846 | CX9g055614 | LOC_Os09g27490 | - | - | Detail |
| C1H9g31093 | 9:13,784,508-13,786,924 | - | C2H9g03009 | CX9g057770 | LOC_Os09g27500 | Os09g0447300 | - | Detail |
| C1H9g08652 | 9:13,791,293-13,793,244 | - | C2H9g15068 | CX9g054878 | LOC_Os09g27510 | Os09g0447500 | - | Detail |
| C1H9g00733 | 9:13,798,064-13,800,313 | - | C2H9g11232 | CX9g057290 | LOC_Os09g27520 | Os09g0447600 | - | Detail |
| C1H9g18103 | 9:13,803,853-13,804,824 | - | C2H9g00780 | CX9g055092 | LOC_Os09g27570 | Os09g0448100 | - | Detail |
| C1H9g10551 | 9:13,809,627-13,814,763 | + | C2H9g18939 | CX9g055809 | LOC_Os09g27580 | Os09g0448200 | - | Detail |
| C1H9g31490 | 9:13,821,656-13,823,743 | + | C2H9g17309 | CX9g055972 | LOC_Os09g27590 | Os09g0448500 | GS9 | Detail |
| C1H9g23054 | 9:13,835,890-13,839,743 | + | C2H9g13055 | CX9g056032 | LOC_Os09g27610 | Os09g0448900 | - | Detail |
| C1H9g27006 | 9:13,840,788-13,843,038 | + | C2H9g00544 | CX9g057956 | LOC_Os09g27620 | Os09g0449000 | OsMS1, PTC1 | Detail |
| C1H9g20611 | 9:13,853,460-13,854,311 | + | - | - | - | - | - | Detail |
| C1H9g01763 | 9:13,879,531-13,882,817 | + | C2H9g07425 | CX9g054902 | LOC_Os09g27650 | Os09g0449400 | IDD13 | Detail |
| C1H9g25929 | 9:13,889,865-13,891,025 | + | C2H9g06801 | CX9g058036 | LOC_Os09g27660 | Os09g0449500 | - | Detail |
| C1H9g24951 | 9:13,893,482-13,896,671 | + | C2H9g00964 | CX9g055092 | LOC_Os09g27570 | Os09g0449600 | - | Detail |
| C1H9g21509 | 9:13,905,296-13,907,396 | + | C2H9g26524 | CX9g056221 | LOC_Os09g27680 | Os09g0449800 | - | Detail |
| C1H9g08384 | 9:13,909,876-13,912,768 | + | C2H9g13669 | CX9g058164 | LOC_Os09g27690 | Os09g0450200 | - | Detail |
| C1H9g06430 | 9:13,914,220-13,919,734 | - | C2H9g25772 | CX9g057479 | LOC_Os09g27700 | Os09g0450300 | - | Detail |
| C1H9g22970 | 9:13,934,300-13,935,512 | + | C2H9g17119 | CX9g057225 | LOC_Os09g27730 | Os09g0450600 | - | Detail |
| C1H9g31330 | 9:13,937,171-13,938,277 | - | C2H9g24868 | CX9g057122 | LOC_Os09g27750 | Os09g0451000 | ACO1, OsACO1, ACO | Detail |
| C1H9g25747 | 9:13,951,309-13,952,913 | + | C2H9g13280 | CX9g055115 | LOC_Os09g27820 | Os09g0451400 | ACO2, OsACO2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g23727 | 6:1,154,556-1,156,689 | + | C1H6g21967 | CX6g044602 | LOC_Os06g04080 | Os06g0131500 | - | Detail |
| C2H6g24358 | 6:1,162,866-1,166,381 | - | C1H6g10070 | CX6g041745 | LOC_Os06g04090 | Os06g0131700 | - | Detail |
| C2H6g10300 | 6:1,184,169-1,185,533 | - | - | CX6g042310 | LOC_Os06g04130 | Os06g0132100 | - | Detail |
| C2H6g28984 | 6:1,187,456-1,188,025 | - | C1H6g21299 | CX6g043564 | LOC_Os06g04140 | Os06g0132300 | - | Detail |
| C2H6g09752 | 6:1,188,834-1,189,814 | - | C1H6g21299 | CX6g044687 | LOC_Os06g04150 | Os06g0132400 | YGL18, ChlM | Detail |
| C2H6g08599 | 6:1,191,519-1,197,341 | - | C1H6g23000 | CX6g044041 | LOC_Os06g04169 | Os06g0132500 | OsBDG | Detail |
| C2H6g25055 | 6:1,211,402-1,215,328 | - | C1H6g17422 | CX6g041905 | LOC_Os06g04190 | Os06g0132600 | OsRAD1, RAD1 | Detail |
| C2H6g03148 | 6:1,218,691-1,223,612 | + | C1H6g23540 | CX6g043331 | LOC_Os06g04200 | Os06g0133000 | WX1, wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI | Detail |
| C2H6g22217 | 6:1,226,616-1,226,912 | + | - | CX6g043924 | LOC_Os06g04210 | Os06g0133200 | - | Detail |
| C2H6g28022 | 6:1,230,375-1,230,659 | + | - | CX6g044984 | LOC_Os06g04220 | Os06g0133300 | - | Detail |
| C2H6g14484 | 6:1,233,911-1,234,174 | + | C1H6g09083 | CX6g042298 | LOC_Os06g04230 | Os06g0133400 | - | Detail |
| C2H6g03555 | 6:1,235,005-1,235,286 | - | C1H6g09083 | CX6g042298 | LOC_Os06g04240 | Os06g0133500 | - | Detail |
| C2H6g25685 | 6:1,241,084-1,242,151 | + | - | CX6g042617 | LOC_Os06g04250 | Os06g0133600 | - | Detail |
| C2H6g05959 | 6:1,257,209-1,259,084 | + | C1H6g07345 | CX6g045091 | LOC_Os06g04470 | Os06g0136100 | - | Detail |
| C2H6g30353 | 6:1,260,546-1,264,031 | - | C1H6g21882 | CX6g044476 | LOC_Os06g04270 | Os06g0133800 | - | Detail |
| C2H6g15004 | 6:1,267,478-1,271,368 | + | C1H6g02027 | CX6g044113 | LOC_Os06g04280 | Os06g0133900 | EPSPS, EPSPs, OsEPSPS | Detail |
| C2H6g06475 | 6:1,271,937-1,273,654 | - | C1H6g14754 | CX6g041350 | LOC_Os06g04290 | Os06g0134000 | - | Detail |
| C2H6g13486 | 6:1,274,602-1,276,735 | - | C1H6g07407 | CX6g045804 | LOC_Os06g04300 | Os06g0134050 | - | Detail |
| C2H6g20989 | 6:1,276,836-1,277,219 | - | C1H6g07407 | CX6g045804 | LOC_Os06g04300 | Os06g0134050 | - | Detail |
| C2H6g29611 | 6:1,286,539-1,288,975 | - | C1H6g30767 | CX6g042141 | LOC_Os06g04330 | Os06g0134300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |