| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g12096 | 9:13,757,118-13,758,476 | - | C2H9g27951 | CX9g056835 | LOC_Os09g27450 | Os09g0447000 | - | Detail |
| C1H9g25366 | 9:13,777,068-13,779,794 | + | C2H9g24846 | CX9g055614 | LOC_Os09g27490 | - | - | Detail |
| C1H9g31093 | 9:13,784,508-13,786,924 | - | C2H9g03009 | CX9g057770 | LOC_Os09g27500 | Os09g0447300 | - | Detail |
| C1H9g08652 | 9:13,791,293-13,793,244 | - | C2H9g15068 | CX9g054878 | LOC_Os09g27510 | Os09g0447500 | - | Detail |
| C1H9g00733 | 9:13,798,064-13,800,313 | - | C2H9g11232 | CX9g057290 | LOC_Os09g27520 | Os09g0447600 | - | Detail |
| C1H9g18103 | 9:13,803,853-13,804,824 | - | C2H9g00780 | CX9g055092 | LOC_Os09g27570 | Os09g0448100 | - | Detail |
| C1H9g10551 | 9:13,809,627-13,814,763 | + | C2H9g18939 | CX9g055809 | LOC_Os09g27580 | Os09g0448200 | - | Detail |
| C1H9g31490 | 9:13,821,656-13,823,743 | + | C2H9g17309 | CX9g055972 | LOC_Os09g27590 | Os09g0448500 | GS9 | Detail |
| C1H9g23054 | 9:13,835,890-13,839,743 | + | C2H9g13055 | CX9g056032 | LOC_Os09g27610 | Os09g0448900 | - | Detail |
| C1H9g27006 | 9:13,840,788-13,843,038 | + | C2H9g00544 | CX9g057956 | LOC_Os09g27620 | Os09g0449000 | OsMS1, PTC1 | Detail |
| C1H9g20611 | 9:13,853,460-13,854,311 | + | - | - | - | - | - | Detail |
| C1H9g01763 | 9:13,879,531-13,882,817 | + | C2H9g07425 | CX9g054902 | LOC_Os09g27650 | Os09g0449400 | IDD13 | Detail |
| C1H9g25929 | 9:13,889,865-13,891,025 | + | C2H9g06801 | CX9g058036 | LOC_Os09g27660 | Os09g0449500 | - | Detail |
| C1H9g24951 | 9:13,893,482-13,896,671 | + | C2H9g00964 | CX9g055092 | LOC_Os09g27570 | Os09g0449600 | - | Detail |
| C1H9g21509 | 9:13,905,296-13,907,396 | + | C2H9g26524 | CX9g056221 | LOC_Os09g27680 | Os09g0449800 | - | Detail |
| C1H9g08384 | 9:13,909,876-13,912,768 | + | C2H9g13669 | CX9g058164 | LOC_Os09g27690 | Os09g0450200 | - | Detail |
| C1H9g06430 | 9:13,914,220-13,919,734 | - | C2H9g25772 | CX9g057479 | LOC_Os09g27700 | Os09g0450300 | - | Detail |
| C1H9g22970 | 9:13,934,300-13,935,512 | + | C2H9g17119 | CX9g057225 | LOC_Os09g27730 | Os09g0450600 | - | Detail |
| C1H9g31330 | 9:13,937,171-13,938,277 | - | C2H9g24868 | CX9g057122 | LOC_Os09g27750 | Os09g0451000 | ACO1, OsACO1, ACO | Detail |
| C1H9g25747 | 9:13,951,309-13,952,913 | + | C2H9g13280 | CX9g055115 | LOC_Os09g27820 | Os09g0451400 | ACO2, OsACO2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g01356 | 1:22,547,149-22,552,418 | + | C1H1g08197 | CX1g000972 | LOC_Os01g43870 | Os01g0629400 | - | Detail |
| C2H1g12475 | 1:22,555,116-22,555,352 | + | - | - | LOC_Os01g43880 | Os01g0629500 | - | Detail |
| C2H1g02903 | 1:22,558,803-22,559,798 | + | C1H1g20267 | CX1g002102 | LOC_Os01g43890 | Os01g0629600 | - | Detail |
| C2H1g15801 | 1:22,566,740-22,567,108 | + | C1H1g20267 | CX1g002102 | LOC_Os01g43890 | Os01g0629600 | - | Detail |
| C2H1g07937 | 1:22,570,471-22,576,655 | - | C1H1g14568 | CX1g006840 | LOC_Os01g43910 | Os01g0629900 | - | Detail |
| C2H1g22336 | 1:22,609,633-22,616,484 | + | C1H1g00799 | CX1g005258 | LOC_Os01g44040 | Os01g0631100 | - | Detail |
| C2H1g25630 | 1:22,617,364-22,620,467 | + | C1H1g26941 | CX1g002535 | LOC_Os01g44050 | Os01g0631200 | - | Detail |
| C2H1g14517 | 1:22,637,435-22,643,979 | + | C1H1g05926 | CX1g001624 | LOC_Os01g44069 | Os01g0631400 | - | Detail |
| C2H1g24347 | 1:22,651,516-22,652,365 | + | C1H1g08811 | CX1g000338 | LOC_Os01g44090 | Os01g0631500 | - | Detail |
| C2H1g14152 | 1:22,675,518-22,679,990 | + | C1H1g07009 | CX1g001009 | LOC_Os01g44110 | Os01g0631700 | - | Detail |
| C2H1g16370 | 1:22,684,091-22,692,095 | + | C1H1g05320 | CX1g000935 | LOC_Os01g44130 | Os01g0631900 | - | Detail |
| C2H1g06740 | 1:22,707,438-22,709,297 | + | C1H1g12869 | - | - | - | - | Detail |
| C2H1g03548 | 1:22,722,911-22,723,426 | - | C1H1g13707 | - | LOC_Os01g44210 | Os01g0633000 | - | Detail |
| C2H1g23506 | 1:22,728,196-22,734,469 | + | C1H1g09519 | CX1g000578 | LOC_Os01g44220 | Os01g0633100 | AGPL2, OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2 | Detail |
| C2H1g25610 | 1:22,736,618-22,740,433 | + | C1H1g25629 | CX1g004196 | LOC_Os01g44230 | Os01g0633200 | - | Detail |
| C2H1g21259 | 1:22,742,692-22,745,124 | + | C1H1g17417 | CX1g001984 | LOC_Os01g44250 | Os01g0633400 | - | Detail |
| C2H1g13154 | 1:22,750,032-22,751,941 | + | C1H1g26792 | CX1g005798 | LOC_Os01g44260 | Os01g0633500 | Rd, DFR | Detail |
| C2H1g30459 | 1:22,755,586-22,762,743 | - | C1H1g26567 | CX1g002472 | LOC_Os01g44310 | Os01g0634300 | - | Detail |
| C2H1g20909 | 1:22,774,885-22,776,872 | - | C1H1g01839 | CX1g002072 | LOC_Os01g44330 | Os01g0634500 | - | Detail |
| C2H1g10174 | 1:22,778,406-22,779,964 | - | C1H1g04340 | CX1g000429 | LOC_Os01g44340 | Os01g0634600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |