| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01747 | 1:30,415,265-30,418,741 | - | C2H1g23296 | CX1g005787 | LOC_Os01g59160 | Os01g0806000 | - | Detail |
| C1H1g27652 | 1:30,421,382-30,425,556 | - | C2H1g17900 | CX1g001223 | LOC_Os01g59180 | Os01g0806200 | - | Detail |
| C1H1g03002 | 1:30,439,882-30,440,739 | + | C2H1g24895 | CX1g005984 | LOC_Os01g59200 | Os01g0806400 | - | Detail |
| C1H1g04816 | 1:30,446,521-30,448,685 | + | C2H1g26128 | - | - | - | - | Detail |
| C1H1g05644 | 1:30,477,528-30,478,032 | - | C2H1g23457 | CX1g003314 | LOC_Os01g59320 | - | - | Detail |
| C1H1g20078 | 1:30,478,891-30,479,746 | - | C2H1g23457 | - | - | - | - | Detail |
| C1H1g24133 | 1:30,479,416-30,490,128 | + | C2H1g05117 | CX1g004494 | LOC_Os01g59340 | Os01g0807900 | - | Detail |
| C1H1g17602 | 1:30,491,837-30,497,972 | - | C2H1g04858 | CX1g003387 | LOC_Os01g59350 | Os01g0808100 | OsTGA2 | Detail |
| C1H1g29312 | 1:30,507,899-30,510,166 | + | C2H1g17898 | CX1g004253 | LOC_Os01g59360 | Os01g0808400 | OsCPK2 | Detail |
| C1H1g11629 | 1:30,522,384-30,522,938 | + | C2H5g22106 | CX5g038007 | LOC_Os01g59410 | Os01g0808900 | OsVQ4, qTGW1.2b | Detail |
| C1H1g29168 | 1:30,548,603-30,552,636 | + | C2H1g23554 | CX1g000100 | LOC_Os01g59440 | Os01g0809300 | LRR1, OsLRR1 | Detail |
| C1H1g14629 | 1:30,556,953-30,558,812 | + | C2H1g09879 | CX1g001964 | LOC_Os01g59470 | - | - | Detail |
| C1H1g27334 | 1:30,560,018-30,560,762 | + | C2H1g15165 | CX1g003076 | LOC_Os01g59480 | Os01g0812600 | - | Detail |
| C1H1g04269 | 1:30,562,179-30,563,643 | + | C2H1g15165 | CX1g003076 | LOC_Os01g59480 | Os01g0812600 | - | Detail |
| C1H1g08327 | 1:30,567,914-30,573,223 | + | C2H1g27115 | CX1g004356 | LOC_Os01g59490 | Os01g0809900 | - | Detail |
| C1H1g01557 | 1:30,571,551-30,573,981 | - | C2H1g13365 | CX1g002424 | LOC_Os01g59500 | Os01g0810000 | - | Detail |
| C1H1g20345 | 1:30,574,450-30,578,489 | - | C2H1g08587 | CX1g006451 | LOC_Os01g59510 | Os01g0810100 | - | Detail |
| C1H1g31825 | 1:30,578,781-30,584,908 | + | C2H1g08159 | CX1g000157 | LOC_Os01g59520 | Os01g0810200 | - | Detail |
| C1H1g13792 | 1:30,586,172-30,593,741 | - | C2H1g22778 | CX1g001838 | LOC_Os01g59550 | Os01g0810500 | - | Detail |
| C1H1g02266 | 1:30,595,430-30,602,032 | - | C2H1g19577 | CX1g001838 | LOC_Os01g59560 | Os01g0810600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g00076 | 3:8,821,643-8,824,285 | + | C1H3g16506 | CX3g029623 | LOC_Os03g17990 | Os03g0289200 | - | Detail |
| C2H3g12597 | 3:8,827,655-8,831,012 | + | C1H3g21351 | CX3g025090 | LOC_Os03g18010 | Os03g0289300 | - | Detail |
| C2H3g05021 | 3:8,831,918-8,833,281 | + | C1H3g12635 | CX3g029991 | LOC_Os03g18020 | Os03g0289400 | - | Detail |
| C2H3g09473 | 3:8,839,795-8,844,816 | - | C1H3g24871 | CX3g030981 | LOC_Os03g18030 | Os03g0289800 | OsLDOX2 | Detail |
| C2H3g08584 | 3:8,867,101-8,870,248 | - | C1H3g18241 | CX3g025852 | LOC_Os03g18070 | Os03g0290300 | OsFAD7 | Detail |
| C2H3g10954 | 3:8,876,151-8,877,043 | - | C1H3g19780 | - | - | Os03g0290400 | - | Detail |
| C2H3g13012 | 3:8,877,967-8,885,760 | - | C1H3g18917 | CX3g025324 | LOC_Os03g18080 | Os03g0290500 | - | Detail |
| C2H3g23225 | 3:8,891,979-8,893,790 | + | C1H3g30153 | CX3g026472 | LOC_Os03g18110 | Os03g0290900 | - | Detail |
| C2H3g10304 | 3:8,902,619-8,906,132 | + | C1H3g18009 | CX3g026408 | LOC_Os03g18120 | Os03g0291200 | - | Detail |
| C2H3g15096 | 3:8,906,050-8,910,344 | - | C1H3g24409 | CX3g030158 | LOC_Os03g18130 | Os03g0291500 | ASN1, OsASN1, OsAS1, AS1 | Detail |
| C2H3g11917 | 3:8,933,332-8,938,306 | + | C1H3g22391 | CX3g029744 | LOC_Os03g18140 | Os03g0291800 | - | Detail |
| C2H3g26678 | 3:8,946,414-8,948,421 | + | C1H3g05911 | CX3g026643 | LOC_Os03g18150 | Os03g0292100 | - | Detail |
| C2H3g20112 | 3:8,957,779-8,960,090 | + | C1H3g07369 | CX3g027477 | LOC_Os03g18160 | Os03g0292200 | - | Detail |
| C2H3g05672 | 3:8,970,630-8,972,015 | + | C1H3g17889 | CX3g030839 | LOC_Os03g18170 | Os03g0292700 | - | Detail |
| C2H3g30223 | 3:8,974,461-8,976,844 | - | C1H3g01237 | CX3g025459 | LOC_Os03g18180 | Os03g0292800 | - | Detail |
| C2H3g08063 | 3:8,977,738-8,978,617 | + | C1H3g01195 | CX3g030714 | - | Os03g0727600 | ACS1, ACC1*, OsACS1, Os-ACS1, ACC1 | Detail |
| C2H3g00182 | 3:8,980,116-8,989,686 | - | C1H3g09425 | CX3g026640 | LOC_Os03g18190 | Os03g0292900 | - | Detail |
| C2H3g24196 | 3:8,992,468-8,997,478 | + | C1H3g30417 | CX3g027666 | LOC_Os03g18200 | Os03g0293000 | - | Detail |
| C2H3g19840 | 3:8,998,182-8,999,327 | + | C1H3g18813 | CX3g029007 | LOC_Os03g18200 | Os03g0293100 | - | Detail |
| C2H3g15900 | 3:9,001,550-9,004,961 | + | C1H3g03257 | CX3g030471 | LOC_Os03g18210 | Os03g0293400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |