| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g21426 | 9:13,461,105-13,465,951 | - | - | - | - | - | - | Detail |
| C1H9g04789 | 9:13,473,666-13,476,252 | + | C2H9g06261 | CX9g055711 | LOC_Os09g26960 | Os09g0441400 | - | Detail |
| C1H9g04387 | 9:13,481,147-13,483,789 | + | C2H9g20934 | CX9g057450 | LOC_Os09g26970 | Os09g0441600 | qGL9.1 | Detail |
| C1H9g03625 | 9:13,486,235-13,489,918 | - | C2H9g16046 | CX9g057450 | LOC_Os09g26980 | Os09g0441700 | - | Detail |
| C1H9g22464 | 9:13,500,039-13,504,329 | + | C2H9g26101 | CX9g057036 | LOC_Os09g26999 | Os09g0441900 | - | Detail |
| C1H9g04138 | 9:13,509,833-13,511,300 | - | - | - | - | - | - | Detail |
| C1H9g13747 | 9:13,525,098-13,526,252 | - | - | CX9g056443 | - | Os09g0442000 | - | Detail |
| C1H9g22007 | 9:13,528,757-13,531,306 | - | C2H9g18709 | CX9g056107 | LOC_Os09g27010 | Os09g0442100 | - | Detail |
| C1H9g14149 | 9:13,544,708-13,549,015 | + | C2H9g10492 | CX9g055060 | LOC_Os09g27030 | Os09g0442300 | - | Detail |
| C1H9g06228 | 9:13,550,934-13,553,353 | + | C2H9g27420 | CX9g054851 | LOC_Os09g27040 | Os09g0442400 | OsGEX1 | Detail |
| C1H9g28611 | 9:13,559,267-13,562,768 | + | C2H9g03487 | CX9g058113 | LOC_Os09g27050 | Os09g0442600 | OsRSH3 | Detail |
| C1H9g25409 | 9:13,566,086-13,566,693 | - | C2H9g20875 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C1H9g17795 | 9:13,577,332-13,581,797 | - | C2H9g29144 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C1H9g01438 | 9:13,585,058-13,587,944 | + | C2H9g18109 | CX9g057769 | LOC_Os09g27070 | Os09g0442800 | - | Detail |
| C1H9g25976 | 9:13,591,005-13,595,509 | + | C2H9g05302 | CX9g056575 | LOC_Os09g27080 | Os09g0442900 | - | Detail |
| C1H9g18855 | 9:13,595,225-13,604,627 | - | C2H9g09021 | CX9g055406 | LOC_Os09g27090 | Os09g0443000 | - | Detail |
| C1H9g19048 | 9:13,605,002-13,605,610 | + | C2H9g09021 | CX9g055406 | LOC_Os09g27100 | Os09g0443000 | - | Detail |
| C1H9g26138 | 9:13,608,828-13,618,054 | - | C2H9g03456 | CX9g055710 | LOC_Os09g27110 | Os09g0559500 | - | Detail |
| C1H9g16243 | 9:13,622,599-13,625,638 | - | C2H9g16776 | CX9g054949 | LOC_Os09g27140 | Os09g0443500 | - | Detail |
| C1H9g02557 | 9:13,628,730-13,630,553 | - | C2H9g27037 | CX9g055154 | LOC_Os09g27150 | Os09g0544300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g16716 | 4:29,196,574-29,202,704 | + | C1H4g13098 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C2H4g14267 | 4:29,203,420-29,205,381 | - | C1H4g29894 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C2H4g26679 | 4:29,222,202-29,228,139 | + | C1H4g08308 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C2H4g19453 | 4:29,231,603-29,237,104 | - | C1H4g00285 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C2H4g17808 | 4:29,238,059-29,238,391 | - | C1H5g05278 | CX4g031937 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| C2H4g23478 | 4:29,239,673-29,239,927 | + | C1H4g10605 | CX4g034501 | - | - | - | Detail |
| C2H4g29870 | 4:29,239,978-29,243,354 | + | C1H4g18316 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C2H4g27682 | 4:29,244,197-29,245,269 | - | C1H4g08413 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C2H4g25028 | 4:29,253,233-29,260,212 | - | C1H4g06808 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C2H4g24912 | 4:29,262,184-29,262,843 | + | - | CX4g036037 | LOC_Os04g56820 | - | - | Detail |
| C2H4g18884 | 4:29,265,411-29,265,767 | + | - | CX4g035877 | - | - | - | Detail |
| C2H4g26604 | 4:29,266,394-29,267,548 | - | - | - | - | - | - | Detail |
| C2H4g20102 | 4:29,268,657-29,274,641 | - | C1H4g18422 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C2H4g00899 | 4:29,296,008-29,297,348 | + | C1H4g27904 | CX4g034957 | LOC_Os04g56900 | Os04g0664500 | OsAHT1 | Detail |
| C2H4g19479 | 4:29,299,350-29,300,699 | - | C1H4g27904 | CX4g035701 | LOC_Os04g56910 | Os04g0664600 | OsAHT2 | Detail |
| C2H4g29529 | 4:29,307,857-29,308,045 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g12473 | 4:29,308,394-29,310,189 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g26922 | 4:29,310,977-29,313,340 | - | C1H4g05011 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| C2H4g09681 | 4:29,314,042-29,316,157 | + | C1H4g08334 | CX4g034395 | - | Os04g0665000 | - | Detail |
| C2H4g19734 | 4:29,317,030-29,318,991 | - | C1H4g02808 | CX4g035345 | LOC_Os04g56950 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |